Snakemake executor plugin: slurm

Open in Gitpod

For documentation, see the Snakemake plugin catalog.

For development and testing, checkout this repo and (depending on your needs) do one of the following

  • Run pixi shell -e dev to open a development environment
  • Run pixi run test to run tests locally (requires a running slurm system)
  • To simultaneously develop the slurm-jobstep and the slurm plugin, uncommend and edit the line #snakemake-executor-plugin-slurm-jobstep = { path = "../snakemake-executor-plugin-slurm-jobstep", editable = true} in the pyproject.toml before running pixi shell -e dev.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for johanneskoester from gravatar.com johanneskoester

Credits

Author: Christian Meesters

License

MIT

Requires

Python <4, >=3.11

Tags

cluster executor plugin slurm snakemake

Classifiers

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for johanneskoester from gravatar.com johanneskoester

Credits

Author: Christian Meesters

License

MIT

Requires

Python <4, >=3.11

Tags

cluster executor plugin slurm snakemake

Classifiers

Report project as malware

Release files for snakemake-executor-plugin-slurm 2.8.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for snakemake-executor-plugin-slurm 2.8.0
File Size Uploaded
snakemake_executor_plugin_slurm-2.8.0.tar.gz 137.9 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for snakemake-executor-plugin-slurm 2.8.0
File Interpreter ABI Platform
snakemake_executor_plugin_slurm-2.8.0-py3-none-any.whl 46.3 kB Python 3 none any Details

Total release size: 184.1 kB

Release files / snakemake_executor_plugin_slurm-2.8.0.tar.gz

Download URL snakemake_executor_plugin_slurm-2.8.0.tar.gz
Size 137.9 kB
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Release files / snakemake_executor_plugin_slurm-2.8.0-py3-none-any.whl

Download URL snakemake_executor_plugin_slurm-2.8.0-py3-none-any.whl
Size 46.3 kB
Tags Python 3
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