SpectrSeqTools

SpectrSeqTools is a fully automatic analysis platform for sequencing small RNA molecules including 144 known post translational modifications measured via LC-MS/MS data.

Installation

We recommend installing SpectrSeqTools via the pixi package manager:

pixi global install -c conda-forge -c bioconda spectrseqtools

Alternatively, a conda environment (for use with e.g. Snakemake) can de defined as follows

channels:
  - conda-forge
  - bioconda
  - nodefaults
dependencies:
  - spectrseqtools

For reproducibility, make sure to specify the version you want to use next to the package name above.

Usage

After installing, run

spectrseqtools --help

to get help using SpectrSeqTools. More extensive documentation with examples will appear here soon.

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