SpectrSeqTools is a fully automatic analysis platform for sequencing small RNA molecules including 144 known post translational modifications measured via LC-MS/MS data.
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SpectrSeqTools
SpectrSeqTools is a fully automatic analysis platform for sequencing small RNA molecules including 144 known post translational modifications measured via LC-MS/MS data.
Installation
We recommend installing SpectrSeqTools via the pixi package manager:
pixi global install -c conda-forge -c bioconda spectrseqtools
Alternatively, a conda environment (for use with e.g. Snakemake) can de defined as follows
channels:
- conda-forge
- bioconda
- nodefaults
dependencies:
- spectrseqtools
For reproducibility, make sure to specify the version you want to use next to the package name above.
Usage
After installing, run
spectrseqtools --help
to get help using SpectrSeqTools. More extensive documentation with examples will appear here soon.
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