teUtils 0.88

Utilities for Tellurium

# Utilities for Tellurium

This repo includes a number of useful utilities for Tellurium users. Modules are described below.

odePrint

This provides a number of methods convert SBML into the equations representing the model.

plotting

This modules contains a variety of additional plotting methods, include 3D, heatmaps for control coefficients, and ascii plots.

prettyTabular

This modules provides two methods to display fluxes and concentrations in a neat tabular format.

buildNetworks

This modules provides two methods to build a linear chain of reactions using either mass-action or Michaelis-Menten kinetics or a random network using uniuni, unibi, biuni or bibi mass-action governed reactions.

fitter This module fits model parameters to observational data.

Installation

pip install tellurium

Or from tellurium you can use te.installPackage (‘teUtils’)