Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming. It supports running workflows written in either Common Workflow Language (CWL) 1.0-1.2 or Workflow Description Language (WDL) 1.0-1.1, as well as having its own rich Python API for writing workflows against. It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.
Check the website for a description of Toil and its features.
Full documentation for the latest stable release can be found at Read the Docs.
Please subscribe to low-volume announce mailing list so we keep you informed
Google Groups discussion forum
See our occasional blog for tutorials.
Use biostars channel for discussion.
Notes:
Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).
Release files for toil 9.5.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| toil-9.5.0.tar.gz | 7.9 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| toil-9.5.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 14.9 MB
Release files / toil-9.5.0.tar.gz
| Download URL | toil-9.5.0.tar.gz |
|---|---|
| Size | 7.9 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.18
|
Release files / toil-9.5.0-py3-none-any.whl
| Download URL | toil-9.5.0-py3-none-any.whl |
|---|---|
| Size | 7.0 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.18
|
