xpore 2.0

xpore is a python package for Nanopore data analysis of differential RNA modifications.

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xPore is a Python package for identification and quantification of differential RNA modifications from direct RNA sequencing.

Installation

xPore requires Python3. To install the latest release with PyPI (recommended), run

$ pip install xpore 

Documentation

Please refer to our xPore documentation (https://xpore.readthedocs.io) for additional information, a quick start guide, and details on the data processing and output file format.

xPore is described in details in a preprint (https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1)

Release History

The current release is xPore v2.0.

Please refer to the github release history for previous releases: https://github.com/GoekeLab/xpore/releases

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Citing xPore

If you use xPore in your research, please cite

Ploy N. Pratanwanich, et al. "Detection of differential RNA modifications from direct RNA sequencing of human cell lines". bioRxiv (2020) doi: https://doi.org/10.1101/2020.06.18.160010

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Contact

xPore is maintained by Ploy N. Pratanwanich, Yuk Kei Wan and Jonathan Goeke from the Genome Institute of Singapore, A*STAR.

If you want to contribute, please leave an issue.

Thank you!