django-blastplus

A simple Django app to conduct web-based homology search with blast+.

Requirements

Blast+
Python 3.6+
Django 3.0
Biopython

Install

pip install -r requirements/base.txt

Download

Quick start

Add "blastplus" to your INSTALLED_APPS setting like this::

INSTALLED_APPS = (
        'blastplus',
)

Include the polls URLconf in your project urls.py like this::

url(r'^blast/', include('blastplus.urls')),

You can modify some defaults in blastplus.settings

- e.g. modify path to nucleotide database::

BLAST_DB_NUCL_LIST = [
            {
                "name": "sample1",
                "path": 'blastplus/sampledata/sample_db1/sample_db',
                "desc": "Sample database 1",
                "annotated": False, },
            {
                "name": "sample2",
                "path": 'blastplus/sampledata/sample_db2/sample_db2',
                "desc": "Sample database 2",
                "annotated": False, },
        ]

Visit search pages:

Blastn, TBlastn, Blastp, Blastx

Example

See our NewtBase portal with django-blastplus app inside. Code newtbase @ github

Metadata

Release files for django-blastplus 3.0.0

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Source distribution (sdist)

Source distribution for django-blastplus 3.0.0
File	Size	Uploaded	Provenance
django-blastplus-3.0.0.tar.gz	378.4 kB	Feb 11, 2020	Without provenance	Details

Built distribution (wheel)

Table of built distributions (wheels) for django-blastplus 3.0.0
File	Interpreter	ABI	Platform	Reset
django_blastplus-3.0.0-py2.py3-none-any.whl 249.3 kB Feb 11, 2020 Without provenance	Python 3, Python 2	none	any	Details

Total release size: 627.7 kB

Release files / django-blastplus-3.0.0.tar.gz

Download URL	django-blastplus-3.0.0.tar.gz
Size	378.4 kB
Tags	Source
SHA-256 checksum How to use checksums	`3756a1f430ac41ecac4d28b690a0ff61f787061e2120e23d37e542c9bee3a968`
BLAKE2b-256 checksum How to use checksums	`72bbd9e9a1ac1223dfccfd47e04a4f4b83597f14e058daa68bf7ce330efb34c8`
Upload date	Feb 11, 2020
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/45.1.0 requests-toolbelt/0.9.1 tqdm/4.42.0 CPython/3.7.4`

Release files / django_blastplus-3.0.0-py2.py3-none-any.whl

Download URL	django_blastplus-3.0.0-py2.py3-none-any.whl
Size	249.3 kB
Tags	Python 2 Python 3
SHA-256 checksum How to use checksums	`2b078a52f5ded4641c154ea189b8c1c5d63132f1f711b90e6215f6a3862c4076`
BLAKE2b-256 checksum How to use checksums	`0fb98aa6638c13371a5889d20823c027833681fac53bd558524705d9f663032c`
Upload date	Feb 11, 2020
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/45.1.0 requests-toolbelt/0.9.1 tqdm/4.42.0 CPython/3.7.4`

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