71 projects
epigenomic-dataset
Python package wrapping ENCODE epigenomic data for a number of reference cell lines.
sanitize-ml-labels
Simple python package to sanitize in a standard way ML-related labels.
extra-keras-metrics
Additional metrics integrated with the keras NN library, taken directly from `Tensorflow <https://www.tensorflow.org/api_docs/python/tf/metrics/>`_
plot-keras-history
A simple python package to print a keras NN training history.
ddd-subplots
Python package making it easier to handle mixed 3d and 2d subplots.
downloaders
Python package to handle download of multiple types of files.
userinput
Simple python package to handle cli user input.
italian-csv-type-prediction
Attempt at predicting common types in CSVs about Italian people and places using Spacy NLP tool.
transpose-dict
Small customizable multiprocessing multi-proxy crawler.
ensmallen
pygifsicle
Python package wrapping the gifsicle library for editing and optimizing gifs.
dict-hash
Simple python tool to hash dictionaries using both default hash and sha256.
minimize-bibfile
Python package to identify and remove duplicated or near-duplicated bib entries.
grape
Rust/Python for high performance Graph Processing and Embedding.
embiggen
Extended implementation of node2vec with several word2vec family algorithms
keras-mixed-sequence
Lazily loading mixed sequences using Keras Sequence, focused on multi-task models.
conservation-scores-dataset
Python package providing retrieval for conservation scores.
barplots
Python package to easily make barplots from multi-indexed dataframes.
crr-labels
Python package wrapping over FANTOM and Roadmap labels for cis regulatory regions.
environments-utils
Utilities to identify which environments is your python script running within.
ensmallen-graph
deflate-dict
Python package to deflate and re-inflate dictionaries.
keras-bed-sequence
Lazily one-hot encoding bed sequences using Keras Sequence.
setup-python-package
A python package that helps you create a python package.
encodeproject
Python package wrapping some of the encode project APIs.
csv-trimming
Package python to remove common ugliness from a csv-like file
notipy-me
A simple python package to send you and any other receiver an email when a portion of code is done running.
dictances
Distances and divergences between distributions implemented in python.
ucsc-genomes-downloader
Python package to quickly download genomes from the UCSC.
random-dict
Simple python package to generate random dictionaries of given types.
compress-json
Python package that handles loading and dumping json files in a compressed fashion.
keras-synthetic-genome-sequence
Python package to lazily generate synthetic genomic sequences for training od Keras models.
validate-version-code
Python package to validate version codes.
silence-tensorflow
Simple python package to shut up Tensorflow warnings and logs.
pybwtool
Python wrapper for the bwtool library.
keras-biological-gaps-sequence
Python package to generate on-hot encoded biological gaps to use for training and prediction.
ugly-csv-generator
Python package to generate ugly real-looking csvs.
random-csv-generator
Tool for rendering plausible real-life csv data.
random-italian-person
Python package to generate an Italian person randomly.
keras-ding
Keras callback for playing a sound when training is complete.
gaussian-process
Wrapper for sklearn.gp_minimize for a simpler parameter specification using nested dictionaries.
holdouts-generator
Simple python package to generate and cache both random and chromosomal holdouts with arbitrary depth.
hpo-downloader
Python package to download HPO annotations and mapping to Uniprot ID and AC and CAFA4 IDs.
histograms
Python package to easily make histograms from multi-indexed dataframes.
extra-keras-utils
Python package collecting commonly used snippets for the Keras library.
approximations
Python package containing approximations of various NP problems.
prefix-codes
Python package implementing a number of prefix codes alongside their utilities.
golomb-coding
Python package implementing Golomb coding.
unary-coding
Python package implementing unary coding.
reduced-binary-coding
Python package implementing reduced binary coding.
gamma-coding
Python package implementing gamma coding.
delta-coding
Python package implementing delta coding.
truncated-binary-encoding
Python package implementing truncated binary encoding.
nibble-coding
Python package implementing nibble and byte coding.
minimal-binary-coding
Python package implementing minimal binary coding.
elias-fano
Python package implementing an educational version of Elias-Fano succint structure. This package is not thought for efficient data storing as the superior and inferior data vectors are implemented as strings to show the results step by step for educational purposes.
interpolative-coding
Python package for binary interpolative coding.
levenshtein-coding
Python package implementing Levenshtein coding.
omega-coding
Python package implementing omega coding.
miur-daad-balancing
Testing dataset balancing techniques from previous works.
auto-tqdm
Wrapper over tqdm for automatically handle switch between jupyter and cli and tunes bar to my liking (automatic resizing, stronger smoothing and tuning for erratic iterations).
fasta-one-hot-encoder
Simple python to lazily one-hot encode fasta files using multiple processes, either single bases or considering arbitrary kmers.
udbnn
Experiment to determine whetever a large batch-size can be helpful with extremely umbalanced datasets.
boston-housing-experiment
MLP experiment.
arrp-dataset
Simple python tool to create dataset for arrps.
training-results-visualizer
Small customizable multiprocessing multi-proxy crawler.
unimi_unsubscribe
Simple package to stop receiving annoying emails from Unimi.
pyadigraph
Pyadigraph turns your networkx into Adigraph latex package.
tinycrawler
Small customizable multiprocessing multi-proxy crawler.
zipf_classifier
A package to create a deterministic classifier based on Zipf law
zipf
A package to create and work with zipf distributions