26 projects
schicluster-rs
Rust port of scHiCluster's impute_chromosome inner pipeline — drop-in replacement for the published Python implementation. Bit-equivalent numerical behaviour, up to ~10× faster on long Hi-C chromosomes.
omicverse-skills
Standalone OmicVerse skills catalog
pyccasc
Pure-Python re-implementation of Seurat's CCA — canonical correlation analysis for single-cell integration, AnnData-native.
pyrun-cca
Pure-Python re-implementation of Seurat's CCA — canonical correlation analysis for single-cell integration, AnnData-native.
run-cca-py
Pure-Python re-implementation of Seurat's CCA — canonical correlation analysis for single-cell integration, AnnData-native.
pyseurat-cca
Pure-Python re-implementation of Seurat's CCA — canonical correlation analysis for single-cell integration, AnnData-native.
seurat-cca
Pure-Python re-implementation of Seurat's CCA — canonical correlation analysis for single-cell integration, AnnData-native.
seurat-cca-py
Pure-Python re-implementation of Seurat's CCA — canonical correlation analysis for single-cell integration, AnnData-native.
omicverse
OmicVerse: A single pipeline for exploring the entire transcriptome universe
pydada2
Pure-Python DADA2 — exact amplicon sequence variant inference from amplicon sequencing data.
pyscdblfinder
Pure-Python scDblFinder — fast doublet detection in scRNA-seq via artificial-doublet xgboost classification, AnnData-native.
pymclustR
Pure-Python re-implementation of CRAN mclust — Gaussian mixture model clustering with all 14 covariance parameterizations, AnnData-native.
pydoubletfinder
Pure-Python DoubletFinder — computational doublet detection in scRNA-seq via artificial-doublet pANN scoring, AnnData-native.
anndataoom
Out-of-memory AnnData powered by Rust (anndata-rs)
omicverse-notebook
OmicVerse-inspired DataFrame and AnnData previews for JupyterLab
omicclaw
OmicClaw gateway-first workspace for web UI, channels, notebooks, and agent workflows
omicverseweb
OmicVerse web interface for single-cell analysis
epione
EpiOne: Generative cartography of single-cell epigenomes
pantheon-notebook
A JupyterLab extension for Pantheon CLI integration with floating input widget
pantheon-cli
Command Line Interface for Pantheon - A framework for building distributed evolvable multi-agent systems.
omicfate
OmicFate: Unraveling the Secrets of Cellular Fate Determination
scltnn
A library to calculate the latent time of scRNA-seq
Pyomic
A python framework library for omics analysis
ERgene
A python module that could analysis the ERGs
exDEG
A python library for screening classified dignosed Gene
ClassifyGene
A python library for screening classified dignosed Gene
