9 projects
pydreg
End-to-end dREG peak calling from PRO-seq/GRO-seq bigWig data
ep-touche
Tools for preprocessing and analyzing high-resolution chromatin contact data.
promoterai-torch
PyTorch port of PromoterAI for promoter variant scoring.
ldetect-lite
Fast calculation of approximately independent LD blocks
PersonalBPNet
PyTorch BPNet-family models (CLIPNET, ProCapNet, PauseNet) for base-resolution genomic signal prediction, extending bpnetlite.
kackle
A short python utility for eliminating k-mer artifacts caused by primer mismatching.
clipnet
CLIPNET is an ensembled convolutional neural network for predicting transcription initiation from DNA sequence at single nucleotide resolution.
daicon
Low-rank adapters for convolutional PyTorch models
trogdor
Transcription Run-On Grants Detection Of Regulatory elements (TROGDOR)
