atropos

Last released on Aug 14, 2020

Specific, sensitive, and speedy trimming of NGS reads.

xphyle

Last released on Dec 7, 2020

Utilities for working with files.

pytest-wdl

Last released on Nov 17, 2020

Pytest plugin for testing WDL workflows.

wdlkit

Last released on Jun 2, 2020

WDL development tools

autoclick

Last released on Mar 12, 2020

Auto-generate Click-based CLIs from python3 type annotations.

ngstream

Last released on Dec 25, 2019

Utilities for streaming NGS reads from SRA and GA4GH accessions.

subby

Last released on Dec 17, 2019

Subprocesses simplified

indextools

Last released on Oct 14, 2019

A toolkit for accelerating genomics using index files.

ngsindex

Last released on May 4, 2019

Utilities for working with NGS index formats.

docparse

Last released on Mar 18, 2019

pokrok

Last released on Jul 13, 2018

Simple API for progress bars using any of several supported libraries

srastream

Last released on Jun 1, 2017

Utilities for streaming NGS reads from SRA accessions.