12 projects
atropos
Specific, sensitive, and speedy trimming of NGS reads.
xphyle
Utilities for working with files.
pytest-wdl
Pytest plugin for testing WDL workflows.
wdlkit
WDL development tools
autoclick
Auto-generate Click-based CLIs from python3 type annotations.
ngstream
Utilities for streaming NGS reads from SRA and GA4GH accessions.
subby
Subprocesses simplified
indextools
A toolkit for accelerating genomics using index files.
ngsindex
Utilities for working with NGS index formats.
docparse
pokrok
Simple API for progress bars using any of several supported libraries
srastream
Utilities for streaming NGS reads from SRA accessions.