14 projects
tskit
The tree sequence toolkit.
htsget
Python API and command line interface for the GA4GH htsget API.
stdpopsim
A library of population genetic simulation models
tsinfer
Infer tree sequences from genetic variation data.
lshmm
kastore
A write-once-read-many store for simple numerical data
phylokit
"Experimental, do not use!"
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
demes
tools for describing demographic models
tszip
Compression utilities for tree sequences
wormtable
Write-once read-many data sets using Berkeley DB.
kingman
An example Python package to simulate Kingman's coalescent
discsim
Efficient coalescent simulation in continuous space
ercs
Coalescent simulations in continuous space