13 projects
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
demes
tools for describing demographic models
tsinfer
Infer tree sequences from genetic variation data.
lshmm
tszip
Compression utilities for tree sequences
tskit
The tree sequence toolkit.
kastore
A write-once-read-many store for simple numerical data
stdpopsim
A library of population genetic simulation models
htsget
Python API and command line interface for the GA4GH htsget API.
wormtable
Write-once read-many data sets using Berkeley DB.
kingman
An example Python package to simulate Kingman's coalescent
discsim
Efficient coalescent simulation in continuous space
ercs
Coalescent simulations in continuous space