tskit

Last released Jan 13, 2023

The tree sequence toolkit.

htsget

Last released Nov 7, 2022

Python API and command line interface for the GA4GH htsget API.

stdpopsim

Last released Nov 2, 2022

A library of population genetic simulation models

tsinfer

Last released Oct 25, 2022

Infer tree sequences from genetic variation data.

lshmm

Last released Sep 23, 2022

kastore

Last released Jul 12, 2022

A write-once-read-many store for simple numerical data

phylokit

Last released May 21, 2022

"Experimental, do not use!"

msprime

Last released May 18, 2022

Simulate genealogical trees and genomic sequence data using population genetic models

demes

Last released Apr 28, 2022

tools for describing demographic models

tszip

Last released Feb 22, 2022

Compression utilities for tree sequences

wormtable

Last released Apr 28, 2016

Write-once read-many data sets using Berkeley DB.

kingman

Last released Jun 1, 2015

An example Python package to simulate Kingman's coalescent

discsim

Last released Jan 2, 2015

Efficient coalescent simulation in continuous space

ercs

Last released Jan 30, 2013

Coalescent simulations in continuous space