31 projects
vrsix
Tools for indexing GREGoR VCFs
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
ga4gh.vrs
GA4GH Variation Representation Specification (VRS) reference implementation
thera-py
VICC normalization routines for therapeutics
variation-normalizer
VICC normalization routine for variations
disease-normalizer
VICC normalization routines for diseases
gene-normalizer
VICC normalization routines for genes
ga4gh.va-spec
GA4GH Variant Annotation (VA) reference implementation
cool-seq-tool
Common Operation on Lots of Sequences Tool
fusor
Computable object representation and validation for gene fusions
ga4gh.cat-vrs
GA4GH Categorical Variation Representation (Cat-VRS) reference implementation
civicpy
CIViC variant knowledgebase analysis toolkit.
wags-tails
Data acquisition tools for Wagnerds
biocommons.seqrepo
Non-redundant, compressed, journalled, file-based storage for biological sequences
dcd-mapping
Map MaveDB scoresets to VRS objects
agct
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
evidence-normalizer
VICC normalization routines for evidence
dgipy
Python wrapper for accessing an instance of DGIdb v5 database
regbot
Fetch regulatory approval data for drug terms
bioutils
miscellaneous simple bioinformatics utilities and lookup tables
biocommons.example
Example Package
uta-align
C-based sequence alignment for Python
seqrepo-rest-service
SeqRepo REST Service
hgvs-dataproviders-rest
hgvs dataproviders based on UTA and SeqRepo REST Interfaces
hgvs
HGVS Parser, Formatter, Mapper, Validator
py-gene-fusions
Package for structuring gene fusions
eutils
"Python interface to NCBI's eutilities API"
uta
Universal Transcript Archive
