32 projects
wags-llm
Wagnerds toolkit for structured LLM workflows
cool-seq-tool
Common Operation on Lots of Sequences Tool
fusor
Computable object representation and validation for gene fusions
disease-normalizer
VICC normalization routines for diseases
ga4gh.va-spec
GA4GH Variant Annotation (VA) reference implementation
ga4gh.cat-vrs
GA4GH Categorical Variation Representation (Cat-VRS) reference implementation
ga4gh.vrs
GA4GH Variation Representation Specification (VRS) reference implementation
gene-normalizer
VICC normalization routines for genes
wags-tails
Data acquisition tools for Wagnerds
civicpy
CIViC variant knowledgebase analysis toolkit.
hgvs
HGVS Parser, Formatter, Mapper, Validator
anyvar
AnyVar provides Python and REST interfaces to validate, normalize, generate identifiers, and register biological sequence variation according to the GA4GH Variation Representation standards.
variation-normalizer
VICC normalization routine for variations
agct
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
evidence-normalizer
VICC normalization routines for evidence
vrs-anvil-toolkit
Useful tools and methods for applying GA4GH GKS and VRS models on the NHGRI AnVIL platform.
biocommons.anyvar
AnyVar provides Python and REST interfaces to validate, normalize, generate identifiers, and register biological sequence variation according to the GA4GH Variation Representation standards.
thera-py
VICC normalization routines for therapeutics
eutils
Python interface to NCBI's eutilities API
biocommons-example
biocommons.example package (namespaced)
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
vrsix
Tools for indexing GREGoR VCFs
biocommons.seqrepo
Non-redundant, compressed, journalled, file-based storage for biological sequences
bioutils
miscellaneous simple bioinformatics utilities and lookup tables
uta-align
C-based sequence alignment for Python
seqrepo-rest-service
SeqRepo REST Service
hgvs-dataproviders-rest
hgvs dataproviders based on UTA and SeqRepo REST Interfaces
py-gene-fusions
Package for structuring gene fusions
uta
Universal Transcript Archive
