16 projects
topiary
Predict, filter, and rank MHC-presented peptides from any antigen source
vaxrank
Mutant peptide ranking for personalized cancer vaccines
isovar
Determine mutant protein sequences from RNA using assembly around variants
mhctools
Python interface to MHC binding, presentation, immunogenicity, and antigen processing predictors
varcode
Variant annotation in Python
gtfparse
Parsing library for extracting data frames of genomic features from GTF files
pyensembl
Python interface to Ensembl reference genome metadata
datacache
Helpers for transparently downloading datasets
serializable
Base class with serialization helpers for user-defined Python objects
pepdata
Immunological peptide datasets and amino acid properties
sercol
Rich collection class with grouping and filtering helpers
fancyimpute
Matrix completion and feature imputation algorithms
openvax_project_template
Project template for OpenVax Python projects
mhcnames
Python library for MHC nomenclature parsing
typechecks
Helper functions for runtime type checking
pepnet
Neural networks for amino acid sequences
