13 projects
atlas-manifest
Schema maps and validation for data trees — the backbones that define what valid data looks like
forest-cli
git-like data management for arbitrary data trees: workspaces, checkouts, remotes, and sync
sadie-antibody
"The Complete Antibody Library"
proteinmpnn-mps
Unofficial fork of ProteinMPNN (Dauparas et al., Science 2022) with Apple Silicon (MPS) support
tview
Publication-quality alignment viewer for nucleotide and amino acid sequences
tpixel
Pixel-block alignment viewer for hundreds of sequences (Roark-style PIXEL plots)
tlogo
Sequence logo generator for aligned FASTA files
boltz-blackwell
Easy installation and utilities for running Boltz on NVIDIA Blackwell GPUs
seqpandas
Read bioinformatics sequence formats into a Pandas DataFrame
oscapify
A robust tool for converting scientific literature CSV files to OSCAP-compatible format
imagetocsv
Converts An Image to a CSV. This exists because Chorus 3.0 are bat-shit and only show images for vital metadata.
pyhmmer-arm
Cython bindings and Python interface to HMMER3.
codonlib
Codon Degeneracy
