coralsnake

Last released Mar 18, 2026

Transcriptome mapping in two colors

markdup

Last released Mar 17, 2026

Fast, accurate BAM deduplication with intelligent UMI detection and correct fragment detection

bwamem

Last released Mar 12, 2026

Bindings to bwa aligner

countmut

Last released Nov 16, 2025

Ultra-fast strand-aware mutation counter

metagene

Last released Oct 31, 2025

Metagene Profiling Analysis and Visualization

cutseq

Last released Sep 5, 2025

Automatically cut adapter / barcode / UMI from NGS data

variant

Last released Jun 5, 2025

annotate variant

cfutils

Last released Nov 30, 2024

Chromatogram File Utils

webblast

Last released Jun 29, 2024

None

omniclip

Last released May 1, 2022

pipeclip

Last released Apr 29, 2022

PIPELINE FOR CLIP SEQ DATA

scienv

Last released Oct 30, 2019

One package for all scientific packages

treeio

Last released Sep 6, 2018

A pure python parser for tree data format IO

molevo

Last released Jun 28, 2018

Molecular Evoluition Simulator

fqutils

Last released Oct 5, 2017

fastq file utils in python