17 projects
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
brainglobe
Python-based tools for computational neuroanatomy.
cellfinder
Automated 3D cell detection in large microscopy images
brainglobe-stitch
A tool to stich large tiled datasets generated by the mesoSPIM.
brainglobe-template-builder
Build unbiased anatomical templates from individual images
brainglobe-utils
Shared general purpose tools for the BrainGlobe project
brainglobe-atlasapi
A lightweight python module to interact with and generate atlases for systems neuroscience.
brainglobe-napari-io
Read and write files from the BrainGlobe computational neuroanatomy suite into napari
brainglobe-space
Anatomical space conventions made easy
brainglobe-workflows
A collection of end-to-end data analysis workflows executed using BrainGlobe tools.
brainrender
Visualisation and exploration of brain atlases and other anatomical data
brainglobe-ccf-translator
a package to translate data between common coordinate frameworks
brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe-registration
A napari plugin for registration to a BrainGlobe atlas.
brainreg
Automated multi-atlas whole-brain microscopy registration
morphapi
A lightweight python package to download neuronal morphologies
