Skip to main content

Bisulfite Sequencing Processing Platform

Project description

BSBolt (BiSulfite Bolt)

A fast and safe read alignment platform for bisulfite sequencing data

BiSuflite Bolt (BSBolt); a fast and scalable bisulfite sequencing analysis platform. BSBolt is an integrated analysis platform that offers support for bisulfite sequencing read simulation, alignment, methylation calling, data aggregation, and data imputation. BSBolt has been validated to work with a wide array of bisulfite sequencing data, including whole genome bisulfite sequencing (WGBS), reduced representative bisulfite sequencing data (RRBS), and targeted methylation sequencing data.

Documentation

BSBolt documentation can be found at bsbolt.readthedocs.io.

Installation

At installation BSBolt compiles two external dependencies Bowtie2 and ART Read Simulation Tools under the terms of the GPLv3 License. Installation failures are generally due to external C libraries not being installed or not being on path.

pip3 install BSBolt -v
  1. Python Dependencies
  2. External C Dependencies
    • libgsl
    • zlib
    • libbz2
    • liblzma
    • libcurl
    • libcrypto

Project details


Release history Release notifications

This version

0.1.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for BSBolt, version 0.1.1
Filename, size File type Python version Upload date Hashes
Filename, size BSBolt-0.1.1.tar.gz (6.4 MB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page