Bisulfite Sequencing Processing Platform

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Project description

BSBolt (BiSulfite Bolt)

A fast and safe read alignment platform for bisulfite sequencing data

BiSuflite Bolt (BSBolt); a fast and scalable bisulfite sequencing analysis platform. BSBolt is an integrated analysis platform that offers support for bisulfite sequencing read simulation, alignment, methylation calling, data aggregation, and data imputation. BSBolt has been validated to work with a wide array of bisulfite sequencing data, including whole genome bisulfite sequencing (WGBS), reduced representative bisulfite sequencing data (RRBS), and targeted methylation sequencing data.

Documentation

BSBolt documentation can be found at bsbolt.readthedocs.io.

Installation

At installation BSBolt compiles two external dependencies Bowtie2 and ART Read Simulation Tools under the terms of the GPLv3 License. Installation failures are generally due to external C libraries not being installed or not being on path.

pip3 install BSBolt -v

Python Dependencies
- pysam >= 0.15.2
- numpy >=1.16.3
- tqdm >= 4.31.1
External C Dependencies
- libgsl
- zlib
- libbz2
- liblzma
- libcurl
- libcrypto

Project details

These details have not been verified by PyPI

Project links

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View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

1.6.0

Mar 28, 2023

1.5.0

Feb 14, 2022

1.4.8

Jun 18, 2021

1.4.7

Jun 9, 2021

1.4.6

Jun 8, 2021

1.4.5

Mar 30, 2021

1.4.4

Feb 3, 2021

1.4.1

Jan 27, 2021

1.4.0

Jan 27, 2021

1.3.6

Oct 20, 2020

1.3.5

Oct 5, 2020

1.3.4

Aug 24, 2020

1.3.3

Aug 24, 2020

1.3.2

Aug 24, 2020

1.3.1

Aug 14, 2020

1.3.0

Jul 7, 2020

1.2.3

Jun 25, 2020

1.2.2

Jun 15, 2020

1.2.1

May 26, 2020

1.2.0

May 25, 2020

1.1.2

May 20, 2020

1.1.1

May 19, 2020

1.1.0

May 18, 2020

1.0.0

Apr 9, 2020

0.3.0

Apr 7, 2020

0.1.2

Nov 14, 2019

This version

0.1.1

Oct 8, 2019

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Source Distribution

BSBolt-0.1.1.tar.gz (6.4 MB view hashes)

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BSBolt-0.1.1-cp38-cp38-macosx_10_15_x86_64.whl (5.6 MB view hashes)

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BSBolt-0.1.1-cp37-cp37m-manylinux1_x86_64.whl (19.1 MB view hashes)

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