A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.5a1-cp310-cp310-win_amd64.whl
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Hashes for PyRuSH-1.0.5a1-cp310-cp310-musllinux_1_1_x86_64.whl
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MD5 | 47d129398a26266c61d538982bf5b6d1 |
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Hashes for PyRuSH-1.0.5a1-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 98124304cac8ddc8d5d6f0c44a008e4f |
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BLAKE2b-256 | c8c25e603b8ac37e0e53b30750e95fa9736ac1bdcb9c8c6cd8e9615c240dc8f6 |
Hashes for PyRuSH-1.0.5a1-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 96624c48861455da00aa691aab2e03992ef8c63a3a103e0ead9733caa7341e39 |
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MD5 | 3265ca2c6dcc1c952ec9a71ff766d72c |
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BLAKE2b-256 | e0512742889c7a0547bef9669425a775e6e79962e4276b86cdad2382eb1db062 |
Hashes for PyRuSH-1.0.5a1-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | c92881e3cebf24895b69634ce6435e7f |
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BLAKE2b-256 | d01d12d2643534c20b3fd4bfd3d5def4961c675a1bca9f0a492c4f9fc6af0475 |
Hashes for PyRuSH-1.0.5a1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 705ac18d84fd678e325b6b67479f3490 |
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BLAKE2b-256 | ad742734cd5137131d1bedcf6a46d3970bc9414e06a1a84f78533c271466147b |
Hashes for PyRuSH-1.0.5a1-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 5fab5df564e9e0dcad3bdf4dbeb9e6e2 |
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BLAKE2b-256 | 7e7bcdf4998b5e02983b9c9a0f00d83cc0b252af5c2da821cbc26b99a19983a2 |
Hashes for PyRuSH-1.0.5a1-cp38-cp38-win_amd64.whl
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MD5 | a2dca4e6473877c697deeeb2067279ec |
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BLAKE2b-256 | 10703831a518b7bb855eaa2ee79d6a35117d989a4ef10000cd7b21c880858030 |
Hashes for PyRuSH-1.0.5a1-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | be2d15b497d3856c8e7fba4b717400ca |
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BLAKE2b-256 | 5a98320fe52d8e16f42a36796a5d10288d9ef9584561c2f3566fd3d49d71a7a4 |
Hashes for PyRuSH-1.0.5a1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 2b350afe32702784b7024c11f04ebbbe869fe849dda63fa03358be94d2156dc8 |
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MD5 | 6b4dd5ed78497ef274c1fbea952d7902 |
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BLAKE2b-256 | 7e6a9258df6d893171fda37ace914de01ef30a7b2a68566febab6fc98ca68109 |
Hashes for PyRuSH-1.0.5a1-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a9d9c6bbe904a138f8ff050d2d48b89b717a241d6a3c62464d81854d5f6d074f |
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MD5 | ebdbf85e20f23d5cefbf1c41b885a9a2 |
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BLAKE2b-256 | 4e3d8d2a035fa7805dad4097ac0bc0c727396338379d41fc8476d45f5f4b4243 |
Hashes for PyRuSH-1.0.5a1-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | f85e4c9796c8df0a9608ee19fa3768d952f2ff49c243f952feae19b2f9275deb |
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MD5 | 0114ece6c5c8336e7daf527c690502cc |
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BLAKE2b-256 | d8da0d915a9b0d764cbff60d598e5fc74e5a6559206a74fae63579d7ac4db0b6 |
Hashes for PyRuSH-1.0.5a1-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 3032b87f9997f8201b8f52082a91da337bef6361a6ba86aaa85271b3b2869757 |
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MD5 | db747f274a697970629f2eb0b0a0cc43 |
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BLAKE2b-256 | 488575bdd50be30d11bd1f7ab4945917fa1b0b6a82b968c2fcd60b1b598f0ea3 |
Hashes for PyRuSH-1.0.5a1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 78dca1757a8d1d7044f78227c812be2b7981767c8da84c00175e11e1eb6b376e |
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MD5 | 4536d7efbc813986c3c15f7d17410e76 |
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BLAKE2b-256 | 149aeec9a6f1b464580e857bb948d547b1d9e94fff596c504ac33fcb2f0334f1 |
Hashes for PyRuSH-1.0.5a1-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 488375a0c1afa6d77945d2d78bc48ce232b4236229d525d3ebf79859307c6b13 |
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MD5 | 158c8610cd028e218ecb50a909ba0ad3 |
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BLAKE2b-256 | bcf0d9b0a6ec7e170fec2cb508e56dbc0afdd9b49c9e7011d8a8913dfab1b9d9 |
Hashes for PyRuSH-1.0.5a1-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 36dcec803298f5c0d39dd792b395e949ab1f71ee2b35dfb6c0cb8a250e2e18d2 |
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MD5 | 05db3aa25fc49b1451785d87143c37db |
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BLAKE2b-256 | a76e5eee9dae58efade0f37177d6708bec3bf0da529acfa23ff0ed1ac0da67a7 |
Hashes for PyRuSH-1.0.5a1-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 60619981aae13480313d1d699e6862fb7cb5036abdd589ce825ba1244b9932f7 |
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MD5 | bae13622b0563ffb93c1d46d96de2306 |
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Hashes for PyRuSH-1.0.5a1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 257f6eb93161736063d9b8e3d04780a96799a8fb827826b523288a8e8320115d |
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MD5 | ce321f8ad95c3cf16726d626e9455cdb |
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BLAKE2b-256 | 4b3a3d93b0701bf48b1a15d952191bb6b11358024a69f2407a3e41741e6750b9 |
Hashes for PyRuSH-1.0.5a1-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 26877adba824aff2c31688cf9d6825c1c2becc68f56b74da4347be61447a112a |
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MD5 | a8c9a8b7c60e267a3994919fb69bc768 |
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BLAKE2b-256 | 3c545d6709749601db389bbd18f7a33b77591a9d56b022826c9723dd2354df2d |