A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.8.dev6-cp311-cp311-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | cdfc3add00ca58e6763a0a39475d82fc |
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Hashes for PyRuSH-1.0.8.dev6-cp311-cp311-musllinux_1_1_x86_64.whl
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MD5 | 5c61e2ba10e7fb885a8747613039f788 |
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Hashes for PyRuSH-1.0.8.dev6-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | b60362eff86870fcbf43b11682e54e91 |
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Hashes for PyRuSH-1.0.8.dev6-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 55c36c6badb1eb9e6d272a8255458926 |
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BLAKE2b-256 | d51caeee9c8fde3bb80e3d6b0212d072408568dbb301be7105209edf7d277375 |
Hashes for PyRuSH-1.0.8.dev6-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | ff95e3067015b106cf1c816ae8c64a7bb41a39f92e04366334a3e0770db0a1a0 |
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MD5 | 0acde324503f5acf77c6abd46e5dbc54 |
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BLAKE2b-256 | 378c726c425b0b210af09de192d80e22e416a8cea3890b0df9c86c07442e7fa1 |
Hashes for PyRuSH-1.0.8.dev6-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 1fe0c7eed0a24611b5831b7806353c36 |
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BLAKE2b-256 | 3dff1fe865bebe3fd19931445e63e4ab87e73ce21332b97d4f6d952e44803844 |
Hashes for PyRuSH-1.0.8.dev6-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 91cf1cfca8490d6d2f379fda821ea74047159299b9f0d7b54eb7400a22064f98 |
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MD5 | dcb925e84f449294ace88aad5d163f2e |
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BLAKE2b-256 | 7ae869c9887808e811c2a77bfc7638e0b38641f227d56cee575344da1408c9cc |
Hashes for PyRuSH-1.0.8.dev6-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 573f85be39783d0458abc1eea22e96d3884bce81ec354e348cead6337b7784bf |
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MD5 | 4ee4831cfc28ef3246fceea992111c90 |
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BLAKE2b-256 | 412974d324433cad946fbc0b4d8e11155e3a67e7437aa80332aeb3a142bfa123 |
Hashes for PyRuSH-1.0.8.dev6-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 420b8ccac18e3e94e4c312d6eb2b4bde |
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BLAKE2b-256 | 2aa8b5cb42ee869cbbe9fee264e58056caa6172e1548b2d22dc829076de4ca67 |
Hashes for PyRuSH-1.0.8.dev6-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | ba57dd851df8577696fc859196f8b567 |
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BLAKE2b-256 | 5a367d76aad30b2498312a11884bcc31979f3e7e1e444d279a09cfd9adf822c3 |
Hashes for PyRuSH-1.0.8.dev6-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 10dc4875e504f3362cf4e6c30fba1f18675950a2f6ec5f55d99f1706f5482785 |
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MD5 | db23d0986677aa6144f73da76d63cd7b |
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BLAKE2b-256 | 79ec25d1753e3fb49125f18765854eca73b7e03ac9525b0649269b8ddfd951ab |
Hashes for PyRuSH-1.0.8.dev6-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 1d9f605400cd91dbbf977438ef4d8b81e8114db1566522aad326c5ea808f13a5 |
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MD5 | c03b282643c66e255a25a74b6b43250d |
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BLAKE2b-256 | acddd97e1aa887ce8bb9cea66f49cb6d46497453888f5dd2f2e4d8c5d0af94ee |
Hashes for PyRuSH-1.0.8.dev6-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | c7761fb48052a4ef7184e1bbc81b63bf |
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BLAKE2b-256 | f9203eed47cffd5f7e7d903f9db89583b23671e5bf20e53d5903cdf296c31b3c |
Hashes for PyRuSH-1.0.8.dev6-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 9be6de8410e6dcf56c7491598914809a |
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BLAKE2b-256 | 79e86dfd5fdbf75d896f60f2fb8efd7089e81dd344773e8ebcc51f15ce2fc891 |
Hashes for PyRuSH-1.0.8.dev6-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | bb3d266095cebd31a20025a899e9b6f7 |
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BLAKE2b-256 | 434726cb25b0b07c7b4b4e1f44db9dd7018f466bf68844805a94c6e279def10e |
Hashes for PyRuSH-1.0.8.dev6-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | c371b675030516dc671b107622916d56 |
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BLAKE2b-256 | 6ad936a87dd8c58d0276a7eac948ffec2c3f6d03a18c005dc2333f1963aca440 |
Hashes for PyRuSH-1.0.8.dev6-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 2fafe22b45163fe4b4604371ee5cb2973cc99ca26f3c6c30326da29cd4721929 |
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MD5 | 6a93bd7dace4b8f968bcf09983a77d32 |
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BLAKE2b-256 | 97d15eb34ecca1c9311fd39f70fdde8fb95c91363ab11c4b6fe023faf2c008bb |
Hashes for PyRuSH-1.0.8.dev6-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 9da6fc49b9a5cc5b5fe8f3b9db1f57e69c3162e3270f4452d6c4f1afd8ad7538 |
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MD5 | a44446330dbe75e2bf48bc9534818e76 |
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BLAKE2b-256 | dc1e4e916838555362ba3ce2ffe6b2d5d10fc6796c67fa5977ba4e5efd58ad3f |
Hashes for PyRuSH-1.0.8.dev6-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 0b165ad09d5c4e9a54308ea4f1316d8b6491e4e44962433bb17f37faeb868df8 |
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MD5 | 1d847df32d3db37ef2f9d8814c10fe00 |
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BLAKE2b-256 | 04267b961b70e7466c8056274a5f5314fc4bef9dddf37204a25d17a30e77d0f6 |
Hashes for PyRuSH-1.0.8.dev6-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 3d9f427df93b7d84b815a927caed85f142c73f0d33fc01a5c6e3946e37c2f0bd |
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MD5 | 9cfe5b377425a89763ac8d2d1c8c402b |
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BLAKE2b-256 | 72ac756a9ff429dbd1d06a4357c7427f08f4db253d1b8995affdba76286a2d80 |
Hashes for PyRuSH-1.0.8.dev6-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 63f3493236341d6c01c3bc7a2093f51d |
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BLAKE2b-256 | fb3c3ac15617404c72b3dabd6a31c18e08f3cea20dac8a17e27853b65e4f8672 |
Hashes for PyRuSH-1.0.8.dev6-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 1018a6ec0c6a5c48c276bfd6425e1e50e4dbb9d3ced3f8757a66d6c0eb949ea8 |
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MD5 | 0f734c69aceb01b835555a2de23da27e |
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BLAKE2b-256 | 838e25cc62e62ed585d1a57e16c662e4f5764a4e5db84936770d6e0e2e34d12a |
Hashes for PyRuSH-1.0.8.dev6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | b3f62ad25f4911c0b762c9e135c3495f |
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BLAKE2b-256 | b619eda3f9f172077641cb276d400e99c53ce43f9c8cacdbb1661488aa158812 |
Hashes for PyRuSH-1.0.8.dev6-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | b4fffd1d1a26086bb2228ad2278f26900c96b6848df53070da7c8e915b427093 |
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MD5 | 75e60090e98d26400ef23a36e51d17c3 |
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BLAKE2b-256 | b324272301085a4f94cf63a528a9f5674bbcb15e287cc6609b5b5dd82c6e504b |