A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.5b1-cp310-cp310-win_amd64.whl
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Hashes for PyRuSH-1.0.5b1-cp310-cp310-musllinux_1_1_x86_64.whl
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MD5 | 53bb3c7d6ece25f7538d253d89d337db |
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Hashes for PyRuSH-1.0.5b1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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Hashes for PyRuSH-1.0.5b1-cp310-cp310-macosx_10_9_x86_64.whl
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MD5 | df2b6eb23a54a4e640376ce7953ec044 |
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BLAKE2b-256 | c294441aa9219802b36a253176c562483d9c05ff4c326c8cf4863312ba1d090c |
Hashes for PyRuSH-1.0.5b1-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 34323a3ac34e689ade956550231bea266829df4c4329c7219c90996de41a753c |
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MD5 | 026f759000bac6ec5459a4bdb5f90be2 |
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BLAKE2b-256 | 38b39ab9dea8a94bfe50a74a1692d2d255affeec02dbc0bfa6a321616de7b447 |
Hashes for PyRuSH-1.0.5b1-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 936076eea98ff459fede9d8aa7fe8c2a |
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BLAKE2b-256 | 9d71e836972e0a60e6bbb80f6e999d487b45c16f3ce000f6c2f17f567fe6401c |
Hashes for PyRuSH-1.0.5b1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 6e92a768fa24de1b10ebe500a43d5d50 |
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BLAKE2b-256 | 687daeec7e44afbaa4ceea5ead0516ee4b95e229b90bd1b0f0746427bda7f633 |
Hashes for PyRuSH-1.0.5b1-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | aedaff386d79ac4b8ab6f2f89c812b26 |
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BLAKE2b-256 | a28de19bfd28b22a7127823f7032f42f9e66108c21cbde15f138f4166b0544db |
Hashes for PyRuSH-1.0.5b1-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 48c4926fa3adda5e65929e0c8f38366f |
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BLAKE2b-256 | 4bd48a95684fc49415737ad024424fdba0eda221bdebfe674edc0aaab5e9ce2f |
Hashes for PyRuSH-1.0.5b1-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 22f7fde70c1964cce1fba0ca0d16a1c0 |
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Hashes for PyRuSH-1.0.5b1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 788187bc6e55a40fd05ffde422701403 |
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BLAKE2b-256 | c1e3ac2bb789b99b160ef5a7d0a526ffe0950343b17fbe8d5d9000418fac4677 |
Hashes for PyRuSH-1.0.5b1-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | ad95d6194571cf3a9df0788e581ef357253ecba8c8ffcf7194d03a40f633b699 |
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MD5 | 8dabd5b9e7387c7ea967e5b79a7195ca |
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BLAKE2b-256 | 0b21d865570c6e7d3fcdd2b9e30c3ac598d57f432b35d2d8ae5578aec64340d0 |
Hashes for PyRuSH-1.0.5b1-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 4f5be3e38f0004498bd87183abcfdb00 |
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BLAKE2b-256 | 83d0c2f0ce61aa226e752e9928af17b8978c61246164a7e8962dd6fdfaef5718 |
Hashes for PyRuSH-1.0.5b1-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 2cb93c178c0a688f83154a6538be28e2304b04ab94deafe8bfd33b7e5ef6404a |
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MD5 | 54c0d230b7e75b32830074bc18957d26 |
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BLAKE2b-256 | 07ee5841f661d1c69f40ba1ef2e8714ee3caab1ecac0de9e5a0bd609b80fb809 |
Hashes for PyRuSH-1.0.5b1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 2ce9910451450fca84928d0bf99f6cc0 |
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BLAKE2b-256 | f67a6566de2a37aa0b46303425ac6ef56122d9d153a6b5ad783caae4512f3f40 |
Hashes for PyRuSH-1.0.5b1-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | a4941336feb0488fc53f1d64c7e29980 |
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BLAKE2b-256 | e9d1a539c61efdda18301f5e830c8b75f93f9d173f4e28e0a67ded888cb8a786 |
Hashes for PyRuSH-1.0.5b1-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | c2a9e0ff83112e4cf87276365d9f1efb0e999bc8fcc467100e46b2358fffc84b |
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MD5 | 15e88c5d35726ec8dbd83d236c227275 |
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BLAKE2b-256 | dcb58e782da01bcc85db9263cff5dc72635a41e4139efe3497f8ba26653df1aa |
Hashes for PyRuSH-1.0.5b1-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 410601d6b73520e2f589725fb6e3b51e0d0a75e474b60a6a870bd66a75d315a1 |
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MD5 | e4006ba5cd84c38b71ebee982309f2be |
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BLAKE2b-256 | b7e0f3b99a437a45eae4efbc03509e6a2fa768db044ab153bad0e738ea48334e |
Hashes for PyRuSH-1.0.5b1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 31726fa3786d2802a5a071a88400d32d |
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BLAKE2b-256 | 2a67e8fb3d3e9eb97ef4cfba4b791a831dd966a30b24420464098766f17cc3a5 |
Hashes for PyRuSH-1.0.5b1-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a415ebbc1ea967a4a733e775d4f54eed766659b22382affc3e2429f6ad0b444b |
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MD5 | b1a0f04827895c98b5cd82cfb9238a3a |
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BLAKE2b-256 | 70cd71e155ec01f940e7d28c1f9dc17bc5130771e091d04a27808e687181860d |