A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.6-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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Hashes for PyRuSH-1.0.6-cp310-cp310-musllinux_1_1_x86_64.whl
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MD5 | 3db13a987bb62d01437db2e77ca69878 |
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Hashes for PyRuSH-1.0.6-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | 568c12e1c026d13dce918c4d9b2786e2 |
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Hashes for PyRuSH-1.0.6-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 83d6960eb67b2dc4853b2bbe4c77df98 |
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BLAKE2b-256 | c931050e27631958016f376f8cce6cd8f9ced722a316dc0d74367359a8113c7f |
Hashes for PyRuSH-1.0.6-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | ddbb949bd746d2c7daae2bb04f1ed2bb |
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BLAKE2b-256 | 1d6b738d412c5f9116779cab3ffa3f5abaf9cdccfeef6161c28b0e0ed830193f |
Hashes for PyRuSH-1.0.6-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 44240512a3ee502a56cb90a6c6f9f51b |
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BLAKE2b-256 | b3d993dbd2876f8b03f8e75e0b2993814a55c0aa8fd5e6bc1685129cd6e4f834 |
Hashes for PyRuSH-1.0.6-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 66f5310a0b45bfb7decf81f3a385864523b6e45de1397435a3d86339f7862d94 |
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MD5 | 6c4fd940fe665f441a8bbd3f80eb7725 |
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BLAKE2b-256 | 41ac3bb4ac78f429d3d58f4a458ec7afa5cf5ad3fe2029d7f73f6e1e631ca54d |
Hashes for PyRuSH-1.0.6-cp39-cp39-macosx_10_9_x86_64.whl
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MD5 | e8a52408a74caf978981ba9f41bfcd8c |
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Hashes for PyRuSH-1.0.6-cp38-cp38-win_amd64.whl
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MD5 | 3cb65e5f70fda23ca3e814be7f354a93 |
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BLAKE2b-256 | 86639c9728337d37cde853b8f5c4a9f325b9bdfb981a8a20a898b3c026ec8254 |
Hashes for PyRuSH-1.0.6-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 81c5ff32f8f2e89ad148671a2c1a69d3 |
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BLAKE2b-256 | e79642b5c3bae430acd1a9b997d7adb283214d326d62c0f11c5df1b5d46d12ac |
Hashes for PyRuSH-1.0.6-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | ceb919db32e514700d203ec669063c40 |
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BLAKE2b-256 | 4a918ad39b03271d016205a3c57fd8e9ad0f2cce046b3127b8f18cef894ee42e |
Hashes for PyRuSH-1.0.6-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | e0048b80a8d1973768978618d73afc36 |
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BLAKE2b-256 | 4e850af336fbe6ac640d958db681233729737cf8c1a2a760bbe3294820fdd5ed |
Hashes for PyRuSH-1.0.6-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 2813ea1587a592362ba307d111ec6536 |
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BLAKE2b-256 | 4ca8f356c9c891f673b3debbe634ee64fca14758aca58633d692271549a5b175 |
Hashes for PyRuSH-1.0.6-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 41f9db20674878441656c7d7f4f73066d85954a85d1c0071bfc574a334dbe757 |
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MD5 | e4f6eed3c356e98e089b4efe8eab213f |
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BLAKE2b-256 | c23563d14e9bb2c4919f2a26cc25c4f92f44c250707f05033a0c2f34388eb54b |
Hashes for PyRuSH-1.0.6-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | efa6b20de158aea4fa6a9e542da58246 |
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BLAKE2b-256 | 571352b9905fa4b1c9607fe5cbdd9f42e6f6d551de73b627d3c06f1d25b07fc1 |
Hashes for PyRuSH-1.0.6-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 9f4d7755adb54d3715a7d664c3bc8e76 |
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BLAKE2b-256 | 557cf01e87eafa3f667b52a6bbf1340498a1a86d095b8f637e7bcdc6bed080b8 |
Hashes for PyRuSH-1.0.6-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | ae0d0acd37605b8ade01ac612907131a2e451713b5c7c518c8a03ef55ceef3d9 |
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MD5 | a3a6ad4a6acca8e1c3c53bf4ceb17f36 |
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BLAKE2b-256 | ed3698bb14bf5d9607ecae051693c2715d1be90fc16c14bc19ae89bddffef7d2 |
Hashes for PyRuSH-1.0.6-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f7061e2a512cc95e17633675ca15dead |
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BLAKE2b-256 | 1d1b90cb03a6eb7b7b6131ffdcc399d801f94eb7a7c4655d2be06961af7aaa8b |
Hashes for PyRuSH-1.0.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 384c8d2b05a1df6ec5044d4fd11f6459 |
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BLAKE2b-256 | 47d564119638237d90a7709da051c045673c178e751674d8001866ef4165d37e |
Hashes for PyRuSH-1.0.6-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 8d5f38259243fa9b35202ef12e21a4d0222497040fd764d591b63e1ab6eabb09 |
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MD5 | 8816caf521ddd90fd0f2bb418c001fc6 |
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BLAKE2b-256 | ab7f04a8851345e8dfd89677c1eb35506f1bf5a15c06b432d3687aae8a86b700 |