A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.6a1-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 40572c6f2337d8e30aaaf42723a4e05f |
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Hashes for PyRuSH-1.0.6a1-cp310-cp310-musllinux_1_1_x86_64.whl
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MD5 | fa916902a7483a49986bfdeb550b4ca8 |
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Hashes for PyRuSH-1.0.6a1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | 6a0a153118f59e614a7d0bfc4f05734d |
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Hashes for PyRuSH-1.0.6a1-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 385cdcc5df24adf0a34d83fed13169ca773cbffdcebb153a2c32abed6b0ed5dd |
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MD5 | f1052401cb5ca2a2b45bec6833d1884f |
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BLAKE2b-256 | 8b41b710c79adfa572eac521d5211dda6096a54a67a49aa3b104cc2bd7036e0a |
Hashes for PyRuSH-1.0.6a1-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 430306a506d6b461495a67d859193acecadbf1353a4574b74b5a4d7499dede16 |
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MD5 | 6a60bfb2600016c85e966b2034996fca |
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BLAKE2b-256 | bef9afceb1a940455d724d6ec68d1876142f121564c776c9c1bfd9c9941ebf27 |
Hashes for PyRuSH-1.0.6a1-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 170072ee83a22a3d3cd6972c2d856d0c61277077dfbea26d99109730046ce0e6 |
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MD5 | 1781f790c94edd5e2d5baab848c11011 |
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BLAKE2b-256 | 0131b47dbe5e27e5cee62bb9203df84e345577f59abe4983ccf4ac8a11099c85 |
Hashes for PyRuSH-1.0.6a1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a8f8ccaca5fe480d9324f878368600814c282da7be5c1fd155f3f279ba6f62aa |
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MD5 | 9e5326913b918ee74ff8282b2b5751b8 |
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BLAKE2b-256 | 5bb63d63c4250dcd0a99910bd6ed24a911aca452a6535653cb2d81019a79386a |
Hashes for PyRuSH-1.0.6a1-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | cae8c968fe3f9222d6836cb255b48db685c187a490f7d5fb6497c058448f12b6 |
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MD5 | a4fc22980292fceedef2d54876ecf614 |
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BLAKE2b-256 | 42711486126ff6c9fe613cbda6a8b37bbc14708c66fd4f4d13b86b026b6eb9ab |
Hashes for PyRuSH-1.0.6a1-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 4eb5aafa6fdc9691dcef14c6c17e7575 |
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BLAKE2b-256 | ad5cb84e090fb5120544c5f288353c90070d6532004aaa7e0493b23ebcdb7d5a |
Hashes for PyRuSH-1.0.6a1-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 29b1cfdc0db442f33d21b56b1bb0b4e9 |
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BLAKE2b-256 | 5ebaa3d93d5e9fffadbff16d44548ab31ce3ca570f77e887d65e1a902d754b23 |
Hashes for PyRuSH-1.0.6a1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 471a58902ff033f2584d4ac0a68ad3399af999f16bc51d1f67aa2fc3882b8d11 |
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MD5 | ce2a67172f28eed0e0926ab3996f5f7c |
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BLAKE2b-256 | c373b44295fd2d245535d03d6d02a72d4024fb3c54748cf60cc2eca9096a059b |
Hashes for PyRuSH-1.0.6a1-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 61b42c78d286aa9b45dc9e84c101e95080e25c5a6629cf10ab3cdda144be38b8 |
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MD5 | fa0a7bc88694ed03c961a9cbd53410c8 |
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BLAKE2b-256 | 0d7c40d9a748291280044de82090ad5623883aed231ad6bc5f3135d8a2a0a20c |
Hashes for PyRuSH-1.0.6a1-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | aac5bc3eba777acbf80d606953b1e17bd0adde863dfb646fef21462bbdb30692 |
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MD5 | d45ec5407a77dff27c85d247df5a415b |
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BLAKE2b-256 | 203bb9fb671b15f9051bb9506916cfb9eeef6086648a88a5a178ab7f5ac9184a |
Hashes for PyRuSH-1.0.6a1-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 97c645588ddddc31244c6b2cf0cc389cea83b51450490b97fc871318bf93b439 |
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MD5 | 90da6547b76203f46b0fd19569def124 |
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BLAKE2b-256 | 9138b533ddc876e29e7ab931329110fd57567bde1bd8a82f318447bff1867579 |
Hashes for PyRuSH-1.0.6a1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | b16415735e7f5327b8857e446fd7f147af569b141875588f540e47368d505661 |
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MD5 | f90bad8814fe0b7c76f2d1b8cc000c61 |
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BLAKE2b-256 | 3f64c410c4089569882bb6c8ce182049b1c22b19a7847b1b6966128ec451d202 |
Hashes for PyRuSH-1.0.6a1-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 167dd4d003b2b0cae36614b1aa6d03587ddcd7eb3c7881f32187fd72d5ab7c01 |
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MD5 | b4b84633f6096269d3e5171a1274fe87 |
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BLAKE2b-256 | 93cef7fc5e6e3c0a0996dee43e895438adfd5b3b5d766b9a8e5fee18151a7b3c |
Hashes for PyRuSH-1.0.6a1-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 1e9d88dcdee353b1c6cafdd1f1316f4b0525c16939624731d1c62928026a44fb |
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MD5 | ce83dedbadc06864cd890bb2a2b162c5 |
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BLAKE2b-256 | 6c1f682c6fb9cfa7915ecc33ff40c6ce2d99a4b7bfc20bb24d408660ce6b0ffa |
Hashes for PyRuSH-1.0.6a1-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 03c1738ad83c8702f20b9d47818973dc98b206a3a666305502e0558d921ae1b0 |
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MD5 | b33dc5287e84cec444e96b71c7dce65c |
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BLAKE2b-256 | 72e312efe550f101629bc795e9257540790065553c995fa5ff19956c8e242a9f |
Hashes for PyRuSH-1.0.6a1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | e9dbcd1c9520b7cd61199abb6441c98fb55ccb919b074da0d4aab895f7c9c534 |
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MD5 | 9f3fee6ed529c5639fe680c4ebe73d93 |
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BLAKE2b-256 | 3457cbef6d8e4c731b76c0d098f7573f90906befc0b962ba98f2f70169464fad |
Hashes for PyRuSH-1.0.6a1-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | eef012b0b908a26aad7cfcd2f59eb85c0ffb7d6d1539c972ffdc071c79440e33 |
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MD5 | bb9a829616c3a58997bccfd3282cfc49 |
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BLAKE2b-256 | 405748fab9b367b2dc66d4674adf4ce559ef5f84bcd0b35267fe2141b06fac8f |