A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.7-cp311-cp311-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | f131f1340d495006673d7d153f741df3cdf81324fbed8b9172e47f9f97a82600 |
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MD5 | d25c4cb50e06af2c72081ac65bf9087a |
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BLAKE2b-256 | 464a472420442bf7b82cdbf41f2e3760986863c9bf71ade04d0c218e180abb5d |
Hashes for PyRuSH-1.0.7-cp311-cp311-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 01237fd3dbe1125be69bf1652a8f3cdda5d90ac6f41f8b5fbb694389b7bf4a3a |
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MD5 | ea3b2d5b85572f1d51ac87405509115e |
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BLAKE2b-256 | 3fc58fcfc2a7ae43ffac1651187bb1427067128508a93eb1cc72b76e09d077a6 |
Hashes for PyRuSH-1.0.7-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 6c59adfb6fe94a78bc27dd2616e61fb2dac1471602895b92fa8eaa5c20784cd6 |
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MD5 | 519a26cb712a9a7af28a7d601ecc12d5 |
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BLAKE2b-256 | 459afeb9461e849c34c5c3c641d41fbe2f36b61a263481179d77e2a36dc3b63d |
Hashes for PyRuSH-1.0.7-cp311-cp311-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | ca8891154c894235f55d032dab7209e4ad933131ca324d5bca5c06d309e7844c |
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MD5 | e3a20b5cbed99348689ac9379986b0ce |
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BLAKE2b-256 | 0c2af35ba56e60abdbf21a012a2b37fa1c451d56c90b844a8b0ede330b6b4015 |
Hashes for PyRuSH-1.0.7-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 69d424a6904f24937a17bb17655295f873ed40376eb96d8546b8e249a96f2b16 |
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MD5 | 721928124d2761e430273c8066d6da02 |
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BLAKE2b-256 | 6fe11269e0be0e9bcbdd5088a90c690c37d4c8704e0566d9df024fd9c010b962 |
Hashes for PyRuSH-1.0.7-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 4449700da064e12d8f24fdb8693b154147a453b9936f9e8bf689f85dc23f733c |
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MD5 | aeb04abd2bfbe0d2147ef5cc065469bc |
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BLAKE2b-256 | df82cf87ce0925d9c1a7ff91ec63064ae40083d5c7ee150f4a7cd6a93b5716bb |
Hashes for PyRuSH-1.0.7-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 018a936b043310bbd44ad2641648cd1d0f309983a4cf012d17798d0adb58bd55 |
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MD5 | 255522cc870b66d5ba0ac1b4b32020d6 |
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BLAKE2b-256 | 6a349c2c512429fb0110078f0801ce2eae89f3bf6a5750cc45f13a6b0e344c89 |
Hashes for PyRuSH-1.0.7-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 23f64514d5f0cd629aecf0d27cb7408f0ec91b3c300734a01e69e3276660dac7 |
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MD5 | af84ff8da0cd64f6964b810e34ac684b |
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BLAKE2b-256 | db285a91762009aba7d3f2653c83ce06d90dc0b0e3559bcafb6ee7e5ee74dc2c |
Hashes for PyRuSH-1.0.7-cp310-cp310-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | 3a69cc0cb4a25a55306d852bc1c551a7e7fd6a34d812694f15b79d428b0cb9f0 |
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MD5 | 863dae26200fc5e40d692b2957c434fd |
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BLAKE2b-256 | 35f1c5b9f85850757c6b6394ef90f07eb36a70ead4c805c4484f3ea7610969e6 |
Hashes for PyRuSH-1.0.7-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | fb6110e9e2469ec90e4c9e3b6d3212c83e0c4ef8a606832cf8d49f1fe1c9a52b |
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MD5 | b7929087ec0e1efc7c46f212a04cdaeb |
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BLAKE2b-256 | 8b2143458eea2f30331cdbd529106ce29af189ee176a28e03ee61f5482061952 |
Hashes for PyRuSH-1.0.7-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 9927406efd63f4e357fe0750e925ce52eef7f959446a9a46937e8843d36593db |
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MD5 | c16a79b01ba71c48fa15f4bdd1fd54ba |
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BLAKE2b-256 | a2206dbdf2fb4395d44c29e40353c9a6397c7bcf903d2bb0a049c256a448e9d9 |
Hashes for PyRuSH-1.0.7-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a47768eca84104a92f857121105e3cb13e2e8144585bb63d35dbbc7c18920222 |
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MD5 | 461dbc733073479995bc368ecda9b43d |
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BLAKE2b-256 | 4b27a6aa3a0d0fc2e8a78f7cd0e2c8668b6f2c87fffc6e4545b1648841b848a0 |
Hashes for PyRuSH-1.0.7-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | f99cb99d3b44a1ebb74294316fab5ce40850338ef3489fa6678ad33fcc815a27 |
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MD5 | f88e49a6d921ee9686706227d8fff947 |
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BLAKE2b-256 | da8185545e210c01490d85d9bf10ac07635b7aa253f349ae3d3001ad0e0deafd |
Hashes for PyRuSH-1.0.7-cp39-cp39-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | 578e4a02fd2fbc4be728d4b44580da88fcd26722cd036b8735531db7471905a7 |
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MD5 | e61f65c5f966883a7ed522f3bfd7d826 |
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BLAKE2b-256 | ea615d596c2ff871d23a3bfa0a30386b808beb5e90fe1b05f65c28cde402a3cf |
Hashes for PyRuSH-1.0.7-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 3e14702e67435f4c201bed86c5a8c0ec56360c9e285d31a685ed8136bca03643 |
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MD5 | 41ee97f691424726a13ec6ba90e756a4 |
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BLAKE2b-256 | 401771a496e837d4feec1e218eef9e3714459e31c26bbbc71023921c8a76acff |
Hashes for PyRuSH-1.0.7-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 996b35ce2025451b6da83211841129b3552f5eb795f2fc8b2743221a0343e22f |
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MD5 | 2aa5be5b7f89bd6e6a46ca48cb9a0faf |
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BLAKE2b-256 | 2a858e3b1017dea7791364170a9e3fafccd8f83d0fba7dbd1053fe4d49116f28 |
Hashes for PyRuSH-1.0.7-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 352b94ea2f3d6f62fa0cea5dcc3b10440cebbad4b919a0ca72da23abe4297c94 |
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MD5 | c8b3e4a20a736d6485f680a92b960fde |
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BLAKE2b-256 | fdda65647386e2b573062256630fc67ad240127d29707b8fe30e6c1ce753ebc7 |
Hashes for PyRuSH-1.0.7-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 62c7f569b37d4b5b9bf0d6f6dcbd2ac430575f8cd6079a709d4af32465a0b001 |
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MD5 | 622cfdb4c1910859080f23fc0ac85bb4 |
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BLAKE2b-256 | f65d3e85a6a0e6d08687eb765e47eb83e8af77ef1f200d0ba2ad982b38114025 |
Hashes for PyRuSH-1.0.7-cp38-cp38-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | 667637b9990832195f32bdd37239ce8152b3eea981989b402cc381b1972b045a |
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MD5 | 27b3a20040a8bab3bff3eb6c879083ba |
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BLAKE2b-256 | a63a9bb50eca8a96882b8c71f3116bc6fb4c3d7544c2cc195ea2a828c15c4861 |
Hashes for PyRuSH-1.0.7-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | b0464ca44d8f0f2af70beca8921cb799f7f97c4fd61f016372c26f1e7135f236 |
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MD5 | 17824e2a5479b2db282d05778097cacb |
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BLAKE2b-256 | 0cae6c79df8ae79af168d92de7bdb52097033dd52e6f195a0e9351cf7cedb4c6 |
Hashes for PyRuSH-1.0.7-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 9852a85f5bf00ef2676ccc7cadc5c18d4da36ebe005b0a97a9576d6793008c74 |
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MD5 | 03f424266d7e8c88778b12177e3b00b3 |
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BLAKE2b-256 | edaf243e08aa35766ab2afab2b4710fd0f1111a7d7d1f8f026caa6d29e8f0d49 |
Hashes for PyRuSH-1.0.7-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 41cf65e3c5d2091d497a566db5d3f29c1f6059638033c72d9492653ad3e9db7b |
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MD5 | 326cf900118c2fd8a20f032d3939121f |
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BLAKE2b-256 | 80e8126f786bd6a4d07faf8ca0d480103d25d1c0756c03a9db1698f9131735ac |
Hashes for PyRuSH-1.0.7-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | d7308f61f2ec642dc57ed909dd0e057422915e397041ba8dc2284b53f4da50d9 |
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MD5 | b1520cebe141606548202548c07f7188 |
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BLAKE2b-256 | f061bda415a21bc8ac9ed3a4f2cf29308b30bad6bd729e392e9d53a1e92e1b24 |
Hashes for PyRuSH-1.0.7-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 421a0f5d94979081a181674a7d32895f8abf1dc5fb1592186967d6308adacd13 |
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MD5 | 93b6a88d9e6b526c862a193f6333196e |
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BLAKE2b-256 | bce73c64bfb37282446d6e1b4e6e8113a0ed07ab201920fb49857d7afd66797d |
Hashes for PyRuSH-1.0.7-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | fda21540885a3371b6c3fb7a85a34cedd31848d8fafea38ffc6edf54c3e41bd9 |
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MD5 | c4c79db8e0c83206ff34f00631c22b7e |
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BLAKE2b-256 | 9f2d1829e0f8c43bb9a493be6fd2075137ac4212231ada25830627793fb0ef4f |
Hashes for PyRuSH-1.0.7-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | da9385e846c757f56cefc88dc428b4084f822e073c30ff93e982ccdb98011af8 |
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MD5 | 929895f3780fa35fc0d1ee3cd52aeb8c |
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BLAKE2b-256 | 032f05594b1affaf0cac4276f2c0105d50ac1cac06cddeb9acab0034dfdc4bc5 |
Hashes for PyRuSH-1.0.7-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | b86781a46b663a0ed638830870af11e36e745d105013b668c50a6d5785453ed8 |
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MD5 | ab8b776d7074722d5cbd33c63c9c987d |
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BLAKE2b-256 | be5855f3c4edd80604ceb4c8114f2b5e4d2f8abd67595c3a68f67e093bd1bb44 |
Hashes for PyRuSH-1.0.7-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 7e22e7a7d22f60ffab7490a4fe468de1cfc2d81aa69db7212a46b3405b391a11 |
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MD5 | 362691200eaa9868f1b1264f24a56b7c |
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BLAKE2b-256 | a8384d85ace2bc436492f109997760154dbf901d6e2117724ce97337f5552e6c |