A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Hashes for PyRuSH-1.0.7.dev1-cp310-cp310-win_amd64.whl
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Hashes for PyRuSH-1.0.7.dev1-cp310-cp310-macosx_10_9_x86_64.whl
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MD5 | c2ab3a87b544695aa4522354ccd56f2f |
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Hashes for PyRuSH-1.0.7.dev1-cp39-cp39-win_amd64.whl
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MD5 | fc950670a0ddca22adcf0f683ddc47a9 |
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Hashes for PyRuSH-1.0.7.dev1-cp39-cp39-musllinux_1_1_x86_64.whl
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MD5 | 46ee8c3987045e745b0ad97aa3f99fa6 |
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Hashes for PyRuSH-1.0.7.dev1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | 7df36e1538d1f1a09ef39562aff286b7 |
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Hashes for PyRuSH-1.0.7.dev1-cp39-cp39-macosx_10_9_x86_64.whl
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MD5 | 9f83a981b678ed5a1433e4d436a6017d |
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Hashes for PyRuSH-1.0.7.dev1-cp38-cp38-win_amd64.whl
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Hashes for PyRuSH-1.0.7.dev1-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 34c06d13492b26c006279690ced794c4 |
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Hashes for PyRuSH-1.0.7.dev1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | cca4d326fa7d22b52a2aebb988533651 |
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Hashes for PyRuSH-1.0.7.dev1-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | ed864651a3685ff91a0fbe9c425a08e6 |
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BLAKE2b-256 | 96d8f34c8576968848f738ebcb83d5bfb33d4c78b5db59e7c2deaac7c9734289 |
Hashes for PyRuSH-1.0.7.dev1-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 63c3ece5080b9df118b8e1676f68efcf |
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BLAKE2b-256 | 841408a6f31e75b3c9d64c0d08096155bafc64afb5eb40e0f9145b1588e4d41c |
Hashes for PyRuSH-1.0.7.dev1-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7950ff280f4d42183fa3d802473cf5df |
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Hashes for PyRuSH-1.0.7.dev1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 0b88f88e3bfedd6dcb0b6b5d83bf7535 |
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Hashes for PyRuSH-1.0.7.dev1-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 24348adde8d1d92b2ccb935f5d333fea |
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BLAKE2b-256 | 1464c5f025ce2d0600f53583cf7d6f8211778b79d80c0be8f8b3be34bae8bcec |
Hashes for PyRuSH-1.0.7.dev1-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 1f4a47b301e088985124ef0db08338ef |
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BLAKE2b-256 | d09cd0993fdeeaa81ee9958cfd7f7b449dc996f204c36d05d7c09ae550899f77 |
Hashes for PyRuSH-1.0.7.dev1-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 9c571e1b8f8f59a77cf53f0c1d9939c5 |
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Hashes for PyRuSH-1.0.7.dev1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f93e124f24e0d76cc2cf98a44c2f35d0 |
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Hashes for PyRuSH-1.0.7.dev1-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 8a328f053b3e25d7340a76ea026e426cf7c73fb05b2280efbb49e4ffefc4b296 |
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MD5 | 67bce4000727d05c0f6725e152c284c0 |
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