A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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MD5 | 88c2adde790256e1a35258f3b7520bcf |
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Hashes for PyRuSH-1.0.7.dev2-cp311-cp311-macosx_10_9_x86_64.whl
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MD5 | c7e79ebcf7791e4201165184ea760167 |
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Hashes for PyRuSH-1.0.7.dev2-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 39ffbf1781a92c7f81c28ad96da52ae1 |
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Hashes for PyRuSH-1.0.7.dev2-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 8abc6ba82d5e5c20345793b98f0b5f19 |
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Hashes for PyRuSH-1.0.7.dev2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | 1e001169a3078db9333b2171e0bbcbd4 |
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BLAKE2b-256 | 2c330c880c7b772d8a634da58ec0d1901d483a1c1ffa6e80af8b5e646b735c57 |
Hashes for PyRuSH-1.0.7.dev2-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | b61dd2b30b5d86105c7077b01c6a5f2d |
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Hashes for PyRuSH-1.0.7.dev2-cp39-cp39-win_amd64.whl
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MD5 | 934c62dec5548220987bec9c4ae5c990 |
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BLAKE2b-256 | 5e20e4a72f966ffd0ff36e0e0c3ce8f5cdc5b62e468b0167b7b800b1b76b7d26 |
Hashes for PyRuSH-1.0.7.dev2-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f06e5d1473c48a541bcfd9f5e1c7263b |
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Hashes for PyRuSH-1.0.7.dev2-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | f632b966a282ca32542a8419393f5742 |
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Hashes for PyRuSH-1.0.7.dev2-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | a780079f95757325b404d07f011f8a8d |
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BLAKE2b-256 | 4a0ea85badb3677e066fbe0593332725724f3a1b57f5f505e066744f2a305f18 |
Hashes for PyRuSH-1.0.7.dev2-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 712443f2070ee8a3792d6bd56acdc00f |
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BLAKE2b-256 | 4f8201aab92f63be85cce23d8c847b5ecac548253ada6b6cec727c0d9f8721d9 |
Hashes for PyRuSH-1.0.7.dev2-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | cdd388b568c1412b744a70605b82e519 |
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Hashes for PyRuSH-1.0.7.dev2-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7c2aa35dbdb034518aa3c3d09b48fbb7 |
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BLAKE2b-256 | 6d07892c65eb2236176d54aee7051c1a5d1d8aa356cd6b9a8746c7fbdb5600a7 |
Hashes for PyRuSH-1.0.7.dev2-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 52c19c18da47ebcd70041da07dbc6208 |
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BLAKE2b-256 | d93aeceeaa697cfee5901b6fdc96471b2ed09b303af6a4c020fb1e846a9e5ebc |
Hashes for PyRuSH-1.0.7.dev2-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 457b605a58b432d8efe60cfa60b2176a |
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BLAKE2b-256 | 68314a1e7a9dc9a8e0ab7fea995689b089042035437efa15c55d5d975ab47747 |
Hashes for PyRuSH-1.0.7.dev2-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 5ec7811963b993b750d06ccbb8373eb9 |
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Hashes for PyRuSH-1.0.7.dev2-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 33b4fbe7564fb66268b0bd9b1c22470b |
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BLAKE2b-256 | 29fba3244c55ffdbd5483bedc053d373793e183d11be531c6367f42f5370a805 |
Hashes for PyRuSH-1.0.7.dev2-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 68058d0cf915b198b097e4621a1c4071 |
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BLAKE2b-256 | e98f692888c4efb3394e071a8534de2f32deb6bd4926868f8ddaffecf2eda94e |
Hashes for PyRuSH-1.0.7.dev2-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 5014e4bed7a35a583b56d64369d558bc |
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BLAKE2b-256 | 62e87798ece56853f9fc73e4f7f3cdc1d4a11a329bebb43e0cb47b1ffec7e512 |
Hashes for PyRuSH-1.0.7.dev2-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | e109b0efbc5fbfbae4c41e201e80dd25 |
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Hashes for PyRuSH-1.0.7.dev2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 36be7f163c72e8d7e554bcc07f34320c |
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BLAKE2b-256 | c2bc378cb232a61409a0dee335cdbaf6d0b96928fafe6db02dc3f62c82d36904 |
Hashes for PyRuSH-1.0.7.dev2-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 5406df00e85ace2533f0205a6fda0224 |
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