A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Built Distributions
Hashes for PyRuSH-1.0.7.dev3-cp311-cp311-win_amd64.whl
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MD5 | b66f895920c359cb78019572b5d220fc |
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Hashes for PyRuSH-1.0.7.dev3-cp311-cp311-musllinux_1_1_x86_64.whl
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MD5 | 35331661b31329e04168007c6eea4eb5 |
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Hashes for PyRuSH-1.0.7.dev3-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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MD5 | e63e8a41ce4a83c828524e682b96cd01 |
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Hashes for PyRuSH-1.0.7.dev3-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 294fff1d53d643dc590ed9e3986c6242 |
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BLAKE2b-256 | 467d0c7444cdba6c79ad746eeb11c069fbdc4065c716a1c1b617cafdaafbd3e2 |
Hashes for PyRuSH-1.0.7.dev3-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 8e053853d942a8212ce636b600ebbbed |
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BLAKE2b-256 | 6407503398c3cc0bc65a2f7f9bf204f6767cac9c618e71a353c4cad5004b9794 |
Hashes for PyRuSH-1.0.7.dev3-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 827626daa53abe6f80ac7be3347eff8e |
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BLAKE2b-256 | 53aa065e5cb227c7eebb2a79ffc8538c5e40fbe7689cae63758f6bfb120165fa |
Hashes for PyRuSH-1.0.7.dev3-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 06ce5f422a97a0cdd5fded1bf724c234 |
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BLAKE2b-256 | 596defa5dd60de76a4361cb20c9300a857d31f37714b48e91c10b0ae870b1ceb |
Hashes for PyRuSH-1.0.7.dev3-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 4ee87f8ec5f2e4fd0fc532adfe5c8885 |
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BLAKE2b-256 | c36a7c43bf4f88789e383575f98b64c16c42d5352ce1b4fc2aa778bdc79cbd04 |
Hashes for PyRuSH-1.0.7.dev3-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 3219072dc9e0f6c33c056a836ef6d87b |
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BLAKE2b-256 | 18cebde56abb8f03e3f9f430608c2bb4b695ff6794517bbeedb7aba6594441bc |
Hashes for PyRuSH-1.0.7.dev3-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 191dd00beaec55c4fc2ab1d258bd27fa |
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BLAKE2b-256 | 811a972b164a063ab411cbcd7bbb1441c94f0d52a66a9bfcda62373cdeab453e |
Hashes for PyRuSH-1.0.7.dev3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 8c0a893cbf6830593a926d98fe1bcfc8de781565e0f7ad3fa7b45b5850907b1e |
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MD5 | 213a9f44ddc2299082cccd1e3c9b05b5 |
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BLAKE2b-256 | a2e464e6bebf0e9551c7f926b85055c0e9ae4b7e10bba2ced6e590d6a407aa2d |
Hashes for PyRuSH-1.0.7.dev3-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | be5615edae45753845491d47b6798e3a587fa08484eb696798f1279bd16f82d8 |
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MD5 | 03d0b8f60ae6cbcc329e58ff722b423f |
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BLAKE2b-256 | 0afbcbf59ab4dc3258a206e49cc28f8e9a53b2a0136bf5c65cccf14d19c318d6 |
Hashes for PyRuSH-1.0.7.dev3-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 757e7683a86097363e2b8cc0ca79ca42 |
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BLAKE2b-256 | 28753f104fb07508cd90d32a7e49155108524a1ec26656ba81aa167f37f5642d |
Hashes for PyRuSH-1.0.7.dev3-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 39a5b04832be48b611e77024aeb7d7ce |
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BLAKE2b-256 | df492c2a586a97e61585c127aa965099f27dbd783a91680d826242fa19724b76 |
Hashes for PyRuSH-1.0.7.dev3-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | bd950351a2d34e753f0268bf909006f0db0ffadc9c4781b8707f6423569a337d |
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MD5 | 9d6e758e290f4f4ce9d857138d7e1230 |
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BLAKE2b-256 | 138d08d82308485a1e1b333f8bab031200df9d13ec14e1547e06bf5472ef24ad |
Hashes for PyRuSH-1.0.7.dev3-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | f7e39aada69e83645f46141fb3dd4ea666288ba750f2cb689d06782035f18194 |
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MD5 | eee7629900ff17d8656cdcd42cde90de |
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BLAKE2b-256 | c226725abaeb57793f4bc61473ad71d802ef6a27db899ea1f551144fe6960042 |
Hashes for PyRuSH-1.0.7.dev3-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 5cbfdf1525ea1d47aff1c96f51f34d46 |
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BLAKE2b-256 | 1846b04701e3bf79451dfa4c659f37bfa519a96e4423e71e0f0ff297470b1620 |
Hashes for PyRuSH-1.0.7.dev3-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | bd327feb91726f1ce25697638599df76 |
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Hashes for PyRuSH-1.0.7.dev3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 3248e95591a50ba71a89f4d5bf779dff |
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BLAKE2b-256 | 763e7ca846a90f2d8c5cffb85242813fea19018c459fa38637b978e4338f2375 |
Hashes for PyRuSH-1.0.7.dev3-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 69d23e77720c2cd2c689197b42881574 |
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BLAKE2b-256 | 21a253a7a1f5eaf8cfa868ba0102c6a4aed355ec84f5949908b67f3625ce2b49 |
Hashes for PyRuSH-1.0.7.dev3-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 78a168a17d20398040c75ce2c78233d5 |
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BLAKE2b-256 | 237842d0fe6c17a19dec73a000c52ded885285ee998cc93ada4bb4943eb3bc6a |
Hashes for PyRuSH-1.0.7.dev3-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 916214fed11a82d983fd3a0cb40ec98f |
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BLAKE2b-256 | 223d399a4e46b0b17bc999707588429973074d43b253e471a89324e75a503449 |
Hashes for PyRuSH-1.0.7.dev3-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | e61ce096daf2c357c19bd7d5a860486d |
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BLAKE2b-256 | 124aeb600ba184ffd210e3643b8ecb861153c23e9e1d852c36842f5e419527d8 |
Hashes for PyRuSH-1.0.7.dev3-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 32880a6b029b05ade28ff3147b3b8fae |
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BLAKE2b-256 | 7a45b3160802b6b7cd20476480074b9cc8f9eafe3a5270b3e2567123b78026a4 |