A fast implementation of RuSH (Rule-based sentence Segmenter using Hashing).
Project description
PyRuSH is the python implementation of RuSH (Ru le-based sentence S egmenter using H ashing), which is originally developed using Java. RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found here.
Installation
pip install PyRuSH
How to use
A standalone RuSH class is available to be directly used in your code. From 1.0.4, pyRush adopt spaCy 3.x api to initiate an component.
>>> from PyRuSH import RuSH >>> input_str = "The patient was admitted on 03/26/08\n and was started on IV antibiotics elevation" +\ >>> ", was also counseled to minimizing the cigarette smoking. The patient had edema\n\n" +\ >>> "\n of his bilateral lower extremities. The hospital consult was also obtained to " +\ >>> "address edema issue question was related to his liver hepatitis C. Hospital consult" +\ >>> " was obtained. This included an ultrasound of his abdomen, which showed just mild " +\ >>> "cirrhosis. " >>> rush = RuSH('../conf/rush_rules.tsv') >>> sentences=rush.segToSentenceSpans(input_str) >>> for sentence in sentences: >>> print("Sentence({0}-{1}):\t>{2}<".format(sentence.begin, sentence.end, input_str[sentence.begin:sentence.end]))
Spacy Componentized PyRuSH
Start from version 1.0.3, PyRuSH adds Spacy compatible Sentencizer component: PyRuSHSentencizer.
>>> from PyRuSH import PyRuSHSentencizer >>> from spacy.lang.en import English >>> nlp = English() >>> nlp.add_pipe("medspacy_pyrush") >>> doc = nlp("This is a sentence. This is another sentence.") >>> print('\n'.join([str(s) for s in doc.sents]))
A Colab Notebook Demo
Feel free to try this runnable Colab notebook Demo
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Hashes for PyRuSH-1.0.8.dev4-cp311-cp311-win_amd64.whl
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Hashes for PyRuSH-1.0.8.dev4-cp311-cp311-musllinux_1_1_x86_64.whl
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MD5 | 3d7a5440d6d79a9cc771bdfe58399452 |
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Hashes for PyRuSH-1.0.8.dev4-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | e3463325c1906fe12a40ad19c664672d |
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Hashes for PyRuSH-1.0.8.dev4-cp310-cp310-win_amd64.whl
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MD5 | 04a6809bc9a8c1ae341090aec98adc69 |
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Hashes for PyRuSH-1.0.8.dev4-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 3576518713dcc0c94e2d8e2085501e14 |
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MD5 | 358cf4031211f9dbf114361c79248a7c |
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Hashes for PyRuSH-1.0.8.dev4-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 2754b9bcc00633554f84b0afeb53b68c |
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Hashes for PyRuSH-1.0.8.dev4-cp39-cp39-win_amd64.whl
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MD5 | 182202e3d628acbcaa8b2317daa5376a |
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Hashes for PyRuSH-1.0.8.dev4-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 7255d4262144faaedbba3e68314b22b3 |
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Hashes for PyRuSH-1.0.8.dev4-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | b207e88d0f8d265f95375835513413b8 |
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BLAKE2b-256 | 0cc12f5152eb487785f678f12d893fbac6cfc0f82f944cf79e9a44de7d4afc30 |
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Algorithm | Hash digest | |
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MD5 | 484a3bf4087e8dd57e7d00c828e50211 |
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BLAKE2b-256 | 51585301e162136265307beb2da099aec2179f1d69e7015c327bead07a318a26 |
Hashes for PyRuSH-1.0.8.dev4-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 07e0deac14e3c31b7de55f5733956843 |
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BLAKE2b-256 | a34d702ad83678cb259475e26d1f6950a220daa98c7aa185e88463514a2dc10f |
Hashes for PyRuSH-1.0.8.dev4-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 6f0f707c8ff7f32b78c20849348985d5 |
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Hashes for PyRuSH-1.0.8.dev4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | cfc1a22be6d5270617d1c8542c49d10f |
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BLAKE2b-256 | 3a90f0fad8cdaabf1cc295f61e69e09260b40abcc10fac2ec39b2ceed6afea78 |
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Algorithm | Hash digest | |
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MD5 | e8b02fa9388880ebe52db9e1e3db6951 |
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Hashes for PyRuSH-1.0.8.dev4-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | 87042689fc3681ee5633169025c1c806 |
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BLAKE2b-256 | 9b9ef481d98456533cf8036f0aa6f052736b89bcbc1b5f800904562e4950b036 |
Hashes for PyRuSH-1.0.8.dev4-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | b1acc4f954ea864b95aac177f6c4d50e |
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Hashes for PyRuSH-1.0.8.dev4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | cceafa53e442fa8ccc89d751b5653388 |
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BLAKE2b-256 | 11aedcafa092616a98c9139f45ee15200356c6e49035d27af1dcc08f2c58c645 |
Hashes for PyRuSH-1.0.8.dev4-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | dea0708b953b8862c978c9961d9c8aad |
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Hashes for PyRuSH-1.0.8.dev4-cp36-cp36m-win_amd64.whl
Algorithm | Hash digest | |
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MD5 | f0b8cbefd6381cddd7b6e8cbfef22d63 |
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BLAKE2b-256 | 6eb96dbfb358d4463dce067e16aa53240bc85f2ea463c2072a9ff39dd98f7b10 |
Hashes for PyRuSH-1.0.8.dev4-cp36-cp36m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 2da7faee5890585f8f09cf3f5fd99150 |
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BLAKE2b-256 | 0092762c660dc81968f0737df190abe4cb321ee241ee77b36daf5ec358a4bc23 |
Hashes for PyRuSH-1.0.8.dev4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 3c333a67a504da8de2935a84a956ab7f |
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BLAKE2b-256 | 535fa064b424fa9f81b584493eac6bc60bac877a8685530099e282f1ded26507 |
Hashes for PyRuSH-1.0.8.dev4-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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MD5 | 63144f084c14e5b7dc764f4c5bf437e4 |
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