Skip to main content

Split ONT Dorado barcoded reads into per-barcode files (FASTQ/SAM/BAM).

Project description

barcodactyl

Split ONT Dorado-barcoded reads into per-barcode files. Supports FASTQ(.gz), SAM, and BAM.

Install

pip install barcodactyl

Run

barcodactyl reads.fastq -o out/ --prefix run1_

Tests

pip install -e .[test]
pytest -q

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

barcodactyl-0.1.0.tar.gz (4.5 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

barcodactyl-0.1.0-py3-none-any.whl (6.2 kB view details)

Uploaded Python 3

File details

Details for the file barcodactyl-0.1.0.tar.gz.

File metadata

  • Download URL: barcodactyl-0.1.0.tar.gz
  • Upload date:
  • Size: 4.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for barcodactyl-0.1.0.tar.gz
Algorithm Hash digest
SHA256 fa3db02586f841043e19b99df1891a692836725427688e8b71f917f4c76a61d5
MD5 8351c2b4a1732323bd22b6130f7dce33
BLAKE2b-256 0430cabd1a2ca1b7dcfe5c0ebc5243cd4274437d1d2c37672fa44d92882da362

See more details on using hashes here.

Provenance

The following attestation bundles were made for barcodactyl-0.1.0.tar.gz:

Publisher: python-publish.yml on aeiwz/barcodactyl

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file barcodactyl-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: barcodactyl-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 6.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for barcodactyl-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 ffc03930c5c10edb88e3e0711921d3bad3b9227d60ad290a338a172c0ba6be5c
MD5 403d9b8ea38de13bd55595b5f604079f
BLAKE2b-256 5195e6cd00b181110c8f5dd50aea1ffd6fd71368a4d9962b7772d1ef57bf613c

See more details on using hashes here.

Provenance

The following attestation bundles were made for barcodactyl-0.1.0-py3-none-any.whl:

Publisher: python-publish.yml on aeiwz/barcodactyl

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page