Skip to main content

Split ONT Dorado barcoded reads into per-barcode files (FASTQ/SAM/BAM).

Project description

barcodactyl

Split ONT Dorado-barcoded reads into per-barcode files. Supports FASTQ(.gz), SAM, and BAM.

Install

pip install barcodactyl

Run

barcodactyl reads.fastq -o out/ --prefix run1_

Tests

pip install -e .[test]
pytest -q

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

barcodactyl-0.1.1.tar.gz (2.1 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

barcodactyl-0.1.1-py3-none-any.whl (2.4 kB view details)

Uploaded Python 3

File details

Details for the file barcodactyl-0.1.1.tar.gz.

File metadata

  • Download URL: barcodactyl-0.1.1.tar.gz
  • Upload date:
  • Size: 2.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for barcodactyl-0.1.1.tar.gz
Algorithm Hash digest
SHA256 66d5cd7cf333d9b6dc1e978114f968f116e361d4b9dd86fc84185b7f00110908
MD5 bd628faef5c5e8ee9eee8d5585d6ce97
BLAKE2b-256 1cd275f2133981395964ec4aca7007b2b56635c2704de2fee2168b24fc634fa1

See more details on using hashes here.

Provenance

The following attestation bundles were made for barcodactyl-0.1.1.tar.gz:

Publisher: python-publish.yml on aeiwz/barcodactyl

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file barcodactyl-0.1.1-py3-none-any.whl.

File metadata

  • Download URL: barcodactyl-0.1.1-py3-none-any.whl
  • Upload date:
  • Size: 2.4 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for barcodactyl-0.1.1-py3-none-any.whl
Algorithm Hash digest
SHA256 77f28d44279b14a488aa071a474fa9431821018153dab83a1996815baa73b860
MD5 9ecd6393cbdd1f74f18c4c9a098386ba
BLAKE2b-256 6d672ac803ac55f4a1dac26f4dfb5fa6f992b0b35201c16d175dcead146c396a

See more details on using hashes here.

Provenance

The following attestation bundles were made for barcodactyl-0.1.1-py3-none-any.whl:

Publisher: python-publish.yml on aeiwz/barcodactyl

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page