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Split barcoded reads into per-barcode files (FASTQ/SAM/BAM).

Project description

barcodactyl

Split Barcode reads into per-barcode files. Supports FASTQ(.gz), SAM, and BAM.

Install

pip install barcodactyl

Run

barcodactyl reads.fastq -o out/ --prefix run1_

Tests

pip install -e .[test]
pytest -q

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