Skip to main content

Split ONT Dorado barcoded reads into per-barcode files (FASTQ/SAM/BAM).

Project description

barcodactyl

Split ONT Dorado-barcoded reads into per-barcode files. Supports FASTQ(.gz), SAM, and BAM.

Install

pip install barcodactyl

Run

barcodactyl reads.fastq -o out/ --prefix run1_

Tests

pip install -e .[test]
pytest -q

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

barcodactyl-0.1.2.tar.gz (4.5 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

barcodactyl-0.1.2-py3-none-any.whl (6.1 kB view details)

Uploaded Python 3

File details

Details for the file barcodactyl-0.1.2.tar.gz.

File metadata

  • Download URL: barcodactyl-0.1.2.tar.gz
  • Upload date:
  • Size: 4.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for barcodactyl-0.1.2.tar.gz
Algorithm Hash digest
SHA256 2dda463624f4c8bb3d0517dec912ffe6b691514c99824f966f1032d117aaf7a1
MD5 39f018f4189f1bb878cccf39dc6237bc
BLAKE2b-256 6e6e34f4f4245f7c39ba8312ca2c01b3ded2a1eb35cf975cc34d094332051b76

See more details on using hashes here.

Provenance

The following attestation bundles were made for barcodactyl-0.1.2.tar.gz:

Publisher: python-publish.yml on aeiwz/barcodactyl

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file barcodactyl-0.1.2-py3-none-any.whl.

File metadata

  • Download URL: barcodactyl-0.1.2-py3-none-any.whl
  • Upload date:
  • Size: 6.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for barcodactyl-0.1.2-py3-none-any.whl
Algorithm Hash digest
SHA256 46d1f2b732a4df2f8daf9f987619e737d4146d4f6cd4ea5ba386eabad4748953
MD5 ec1326ac7cf687b49eedff08842a91fe
BLAKE2b-256 cb2097eb3b1b1eb833ef4f3560e4b9684d033768cfb76090cc8ccd83b1eb27d3

See more details on using hashes here.

Provenance

The following attestation bundles were made for barcodactyl-0.1.2-py3-none-any.whl:

Publisher: python-publish.yml on aeiwz/barcodactyl

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page