bioimageflow-tracking-tools
Tools for label-stack object extraction, Ultrack and btrack adapters, and migration metrics.
Tools
LabelsToObjects: converts 2D or TYX label images into object centroid and area tables.UltrackLink: links object tables with Ultrack.BTrackLink: links object tables with btrack.TrackMetrics: computes track length, displacement, speed, and area summaries.FilterObjects: filters object tables by area, frame, intensity, and position.TracksToLabels: renders track IDs back into label stacks.TrackTableValidate: validates required columns, frame order, and duplicate track frames.TrackSummary: reports duration, displacement, speed, and frame bounds per track.TrackQualityMetrics: computes gap counts, split/merge flags, and short-track fraction.
Use the live-cell migration tracking workflow in the main workflow catalog for a complete Ultrack and btrack comparison.
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