bioimageflow-tracking-tools
Tools for label-stack object extraction, deterministic centroid linking, track rendering, and migration metrics.
Tools
LabelsToObjects: converts 2D or TYX label images into source-keyed object centroid and area tables.NearestNeighborLink: links adjacent-frame objects with global one-to-one distance assignment, independently per source label stack when the source key is present.TrackMetrics: computes explicit duration, path length, net displacement, speed, and area summaries.FilterObjects: filters object tables by area, frame, intensity, and position.TracksToLabels: renders track IDs back into label stacks.TrackTableValidate: validates required columns, frame order, and duplicate track frames.TrackQualityMetrics: computes gap counts, duplicate assignment conflicts, and short-track fraction.
The package intentionally does not expose Ultrack or btrack table adapters: those libraries require richer native tracking workflows than a centroid-table compatibility shim can represent truthfully.
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