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Performing image analysis by visiting biopb endpoints

Project description

biopb-mcp

License MIT PyPI Python Version MCP CI/CD napari hub

biopb-mcp is the MCP component of the BioPB project

Installation - recommended

curl -fsSL https://biopb.org/install.sh | bash

Installation - alternative methods

These methods only install the mcp component without the rest of BioPB system.

From PyPI

pip install biopb-mcp        # or: uv pip install biopb-mcp

Standalone PyInstaller app bundles (the per-platform .zip/.tar.gz downloads) are temporarily disabled — installation is uv/pip-based for now. Use the recommended one-liner above, or the methods here.

Development Version

To install latest development version:

pip install "git+https://github.com/biopb/biopb.git#subdirectory=biopb-mcp"

Troubleshooting

For URL resolution, the auto-start fallback, and how to resolve startup failures (e.g. a port already in use on a shared node), see docs/troubleshooting.md.

Contributing

Contributions are very welcome. Read development.md first to understand the project architecture.

License

Distributed under the terms of the MIT license, "biopb-mcp" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

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