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The python sister project to CortexJDK

Project Description

Supporting Python versions 3.5 and 3.6.

Cortexpy is a Python package for sequence analysis using linked and colored de Bruijn graphs such as the ones created by Mccortex. This project aims to mirror many of the features contained in CortexJDK.

Install

Install the latest version of cortexpy:

pip install cortexpy

Bugs

Please raise a github issue for any bugs.

Development

Set up the project:

make init

See cortexpy/__main__.py for example uses of cortexpy.

Publishing to Pypi

# assuming version 0.0.1

# Step 1: Set __version__ in cortexpy/__init__.py

# Step 2: Make version commit
git commit -am'Bump to version 0.0.1'

# Step 3: tag commit
git tag 0.0.1

# Step 4: publish to pypi
make deploy
Release History

Release History

This version
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0.2.0

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0.1.1

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0.1.0

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0.0.15

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0.0.14.dev0

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0.0.13

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0.0.12

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0.0.12.dev4

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0.0.12.dev0

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0.0.11

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0.0.10

History Node

0.0.9.dev1

Download Files

Download Files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
cortexpy-0.2.0-py3-none-any.whl (25.5 kB) Copy SHA256 Checksum SHA256 py3 Wheel Jan 16, 2018
cortexpy-0.2.0.tar.gz (19.0 kB) Copy SHA256 Checksum SHA256 Source Jan 16, 2018

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