Skip to main content

An Enhanced tool to process PDB structures based on Gemmi

Install

conda install python=3.12.12 anarci=2020.04.23=py_3 hmmer=3.4=h503566f_3 dockq=2.1.3 trimesh rtree pdbfixer dssp usalign openstructure -c bioconda -c conda-forge
pip install gemmi_protools

Usage

read structures

from gemmi_protools import StructureParser

# load structure
st=StructureParser()
st.load_from_file("7mmo.cif")

# get chain IDs
print(st.chain_ids)

Metadata

Release files for gemmi-protools 1.1.7

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Built distribution (wheel)

Table of built distributions (wheels) for gemmi-protools 1.1.7
File Interpreter ABI Platform Actions
gemmi_protools-1.1.7-py3-none-any.whl Python 3 none any Details for gemmi_protools-1.1.7-py3-none-any.whl

Release files / gemmi_protools-1.1.7-py3-none-any.whl

Download URL gemmi_protools-1.1.7-py3-none-any.whl
Size 158.2 kB
Tags Python 3
SHA-256 checksum
How to use checksums
cc0252a780d8e24b9ca48ce05659bb863182be7c2d82dfcc3386a4a75903155b
BLAKE2b-256 checksum
How to use checksums
391108a54837aab4b53cc0385576a89a257041982c6564ff700b44c166a3147c
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing?
No
Uploaded via twine/6.2.0 CPython/3.12.2

Security for gemmi-protools 1.1.7

Provenance

Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.

No provenance found

None of the files in this release were uploaded with provenance metadata.

A note on package security

PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.

To learn more about protecting yourself from malicious actors, visit our package security documentation.

Release history Release notifications | RSS feed

This release

1.1.7 This release

1 release file No provenance

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page