hg38genome
A package to work with hg38 genomic intervals.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install hg38genome(not yet!!)
Usage
# ailist version: 0.1.7
from hg38genome import Hg38Genome
genome = Hg38Genome()
genome.n_CpGs
genome.n_bases
genome.tss()
genome.tss(upstream=1000, downstream=1000)
1 maintainer
Metadata
1 maintainer
Release files for genome-info 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| genome_info-1.0.1.tar.gz | 297.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| genome_info-1.0.1-cp311-cp311-macosx_14_0_x86_64.whl | CPython 3.11 | CPython 3.11 | macOS 14.0+ x86-64 | Details |
Total release size: 680.2 kB
Release files / genome_info-1.0.1.tar.gz
| Download URL | genome_info-1.0.1.tar.gz |
|---|---|
| Size | 297.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
a4e8f1528aae8880918e3c269ff3264fb76329c218330d9708b5d3dc379118af
|
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.7.1 CPython/3.11.3 Darwin/23.1.0
|
Release files / genome_info-1.0.1-cp311-cp311-macosx_14_0_x86_64.whl
| Download URL | genome_info-1.0.1-cp311-cp311-macosx_14_0_x86_64.whl |
|---|---|
| Size | 383.2 kB |
| Tags | CPython 3.11 macOS 14.0+ x86-64 |
|
SHA-256 checksum How to use checksums |
37ce6b59096cc05d91e51a753c5dc11ede6d21837f364da8ec29139052f487d0
|
|
BLAKE2b-256 checksum How to use checksums |
a29173c0e4f2a5c6f4eac84357252a7c57d79eaeb4c43f5d92cfe2f051347f3e
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.7.1 CPython/3.11.3 Darwin/23.1.0
|
