genome_info_
A package to work with genomic intervals.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install genome_info(not yet!!)
Usage
import genome_info_
genome = genome_info.GenomeInfo("hg38")
genome.chrom_sizes
genome.n_bases
genome.tss()
genome.tss(upstream=1000, downstream=1000)
1 maintainer
Metadata
1 maintainer
Release files for genome-info 1.0.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| genome_info-1.0.5.tar.gz | 463.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| genome_info-1.0.5-cp311-cp311-macosx_14_0_x86_64.whl | CPython 3.11 | CPython 3.11 | macOS 14.0+ x86-64 | Details |
Total release size: 931.8 kB
Release files / genome_info-1.0.5.tar.gz
| Download URL | genome_info-1.0.5.tar.gz |
|---|---|
| Size | 463.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
1d5206551cb8071cccf89eb204425cb5e0aef7923d818762bae969d8115c7299
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.7.1 CPython/3.11.3 Darwin/23.2.0
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Release files / genome_info-1.0.5-cp311-cp311-macosx_14_0_x86_64.whl
| Download URL | genome_info-1.0.5-cp311-cp311-macosx_14_0_x86_64.whl |
|---|---|
| Size | 468.6 kB |
| Tags | CPython 3.11 macOS 14.0+ x86-64 |
|
SHA-256 checksum How to use checksums |
88739c02dfc9af100e28de628fa3201bff5928cdaedee289ce888d049f398b8f
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.7.1 CPython/3.11.3 Darwin/23.2.0
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