genotype provides an automated pipipeline for comparinggenotypes from different assays.

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  • License: MIT License (MIT)
  • Author: Robin Andeer
  • Tags genotype, development
Classifiers

Project description

Genotype

Build Status - Github Coverage Status GitHub issues-closed Average time to resolve an issue Percentage of issues still open CodeFactor Code style: black Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.

Install

$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype

Help?

Please check out the documentation

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Avatar for clingen from gravatar.com clingen Avatar for henriks from gravatar.com henriks Avatar for karlnyr from gravatar.com karlnyr

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Project links
Meta
  • License: MIT License (MIT)
  • Author: Robin Andeer
  • Tags genotype, development
Classifiers

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This version

3.0.0

2.5.2

2.5.1

2.5.0

2.2.1

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