A workflow assembler for genome analytics and informatics
kronos is a software tool for automating reproducible, auditable and distributable bioinformatics workflow development. It obviates explicit coding for workflow development to a great extent by compiling a text configuration file into an executable Python scripts.
For running on a cluster using drmaa, i.e. using -b drmaa, you will need to install:
Please refer to kronos online documentation.
email: Jafar Taghiyar <firstname.lastname@example.org>
Please report issues in our kronos google group.
added a mechanism to update the requirements of the implicit merge via GENERAL section. Note: you can switch off the implicit merge and use an explicit merge if you want to specify a particular requirement for only that merge task.
previously, multiple identical implicit merge tasks could exist in a workflow. In the new version, they are combined into a single merge task that happens only once.
added a switch called merge that defaults to True in the run subsection of each task. If it is set to False, the implicit merging mechanism is switched off for that task and the following warning message is shown when initializing the workflow:
UserWarning: Implicit merge is off for task <the_task_name>. You may have to use an explicit merge task.
added support for tags in the interval file, i.e. an optional tag can be added for each chunk in each line of the interval file that will be used as the suffix for the name of the task corresponding to that chunk. The tags should be added to each line using tab as the separation character, e.g.:
chunk1 tag1 chunk2 tag2 chunk3 chunk4 tag4
First version released!
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
|File Name & Checksum SHA256 Checksum Help||Version||File Type||Upload Date|
|kronos_pipeliner-2.3.0-py2-none-any.whl (41.9 kB) Copy SHA256 Checksum SHA256||py2||Wheel||Oct 6, 2016|
|kronos_pipeliner-2.3.0.tar.gz (33.6 kB) Copy SHA256 Checksum SHA256||–||Source||Oct 6, 2016|