mbipy
Modulation based x-ray phase contrast imaging.
Installation
Clone the repository and cd to the directory, then:
pip install .
Usage
See the example notebooks.
Algorithms
Normal Integration
Functional Interface
| function | CuPy | JAX | Numba | NumPy | PyTorch |
|---|---|---|---|---|---|
| arnison | ๐ข | ๐ข | ๐ข | ๐ข | ๐ข |
| dct_poisson | ๐ข | ๐ข | ๐ข | ๐ข | ๐ข |
| dst_poisson | ๐ข | ๐ข | ๐ข | ๐ข | ๐ข |
| frankot | ๐ข | ๐ข | ๐ข | ๐ข | ๐ข |
| kottler | ๐ข | ๐ข | ๐ข | ๐ข | ๐ข |
| li | ๐ข | ๐ด | ๐ด | ๐ข | ๐ด |
| southwell | โ | ๐ด | ๐ด | ๐ข | ๐ด |
OOP Interface
| class | CuPy | JAX | Numba | NumPy | PyTorch |
|---|---|---|---|---|---|
| Li | ๐ข | ๐ด | ๐ด | ๐ข | ๐ด |
| Southwell | โ | ๐ด | ๐ด | ๐ข | ๐ด |
Phase Retrieval
Implicit
Functional Interface
| function | CuPy | JAX | Numba | NumPy | PyTorch |
|---|---|---|---|---|---|
| lcs | โ | ๐ข | โ | ๐ข | ๐ข |
| lcs_df | โ | ๐ข | โ | ๐ข | ๐ข |
| lcs_ddf | โ | ๐ข | โ | ๐ข | ๐ข |
OOP Interface
| class | CuPy | JAX | Numba | NumPy | PyTorch |
|---|---|---|---|---|---|
| Lcs | โ | โ | โ | ๐ข | ๐ข |
| LcsDf | โ | โ | โ | ๐ข | ๐ข |
| LcsDDf | โ | โ | โ | ๐ข | ๐ข |
Explicit
Functional Interface
| function | CuPy | JAX | Numba | NumPy | PyTorch |
|---|---|---|---|---|---|
| umpa | โ | โ ยน | โ | ๐ข | โ |
| xst | โ | โ ยน | โ | ๐ข | โ |
| xsvt | โ | โ ยน | โ | ๐ข | โ |
| xst_xsvt | โ | โ ยน | โ | ๐ข | โ |
OOP Interface
| function | CuPy | JAX | Numba | NumPy | PyTorch |
|---|---|---|---|---|---|
| Umpa | โ | โ ยน | โ | ๐ข | โ |
| Xst | โ | โ ยน | โ | ๐ข | โ |
| Xsvt | โ | โ ยน | โ | ๐ข | โ |
| XstXsvt | โ | โ ยน | โ | ๐ข | โ |
ยน Has significant memory usage during compilation due to lack of strides in JAX.
ยฒ No wavelet transform available in numba - contributions welcome!
Data
To download the data for the examples, you need to use git-lfs.
Dependencies
Optional:
1 maintainer
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