metanetx-sdk

Parse and clean up information from MetaNetX (https://metanetx.org).

These details have not been verified by PyPI

Project description

Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org namespaces.

Install

It’s as simple as:

pip install metanetx-sdk

Usage

The authoritative source on how to use the various commands is always accessible via the commands’ help.

mnx-sdk -h

Normally you would start by loading the files from the MetaNetX FTP server

mnx-sdk pull ./data

and then transforming each data table.

mnx-sdk etl chem-prop ./data/chem_prop.tsv.gz ./data/transformed_chem_prop.tsv.gz

You can also directly use the functions from the metanetx_sdk.api module.

Copyright

Copyright © 2019-2020, Moritz E. Beber.
Free software distributed under the Apache Software License 2.0.

Project details

These details have not been verified by PyPI

Release history Release notifications | RSS feed

This version

4.2.0

Sep 26, 2021

4.1.1

Oct 29, 2020

4.1.0

Oct 26, 2020

0.5.0

Apr 25, 2020

0.4.3

Feb 24, 2020

0.4.2

Jan 28, 2020

0.4.0

Jan 28, 2020

0.3.4

Oct 16, 2019

0.3.3

Oct 15, 2019

0.3.2

Oct 8, 2019

0.3.1

Oct 7, 2019

0.3.0

Oct 7, 2019

0.2.2

Oct 4, 2019

0.2.1

Sep 21, 2019

0.2.0

Sep 20, 2019

0.1.0

Sep 15, 2019

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