mg-toolkit 0.2.2

Metagenomics toolkit

Metagenomics toolkit enables scientists to download all of the sample metadata for a given study or sequence to a single csv file.

Install metagenomics toolkit

pip install mg-toolkit

Usage

$ mg-toolkit -h
usage: mg-toolkit [-h] [-V] [-d] {original_metadata,sequence_search} ...

Metagenomics toolkit
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positional arguments:
  {original_metadata,sequence_search}
    original_metadata   Download original metadata
    sequence_search     Search sequence

optional arguments:
  -h, --help            show this help message and exit
  -V, --version         print version information
  -d, --debug           print debugging information

Example:

$ mg-toolkit original_metadata -a ERP001736

or:

$ mg-toolkit sequence_search -s test.fasta