mito-utils 0.0.5

Utilities for MT-based single cell Lineage Tracing (scLT).

MiTo

This is MiTo: a python package for robust inference of mitochondrial clones and phylogenies. See also nf-MiTo, the companion Nextflow pipeline.

Documentation

A preliminary documentation of key functionalitites and APIs is available at MiTo Docs.

Installation

1. Install mamba (or conda)
2. Clone this repo:

git clone https://github.com/andrecossa5/MiTo.git

3. Reproduce MiTo conda environment:

cd MiTo
mamba env create -f ./envs/environment.yml -n MiTo

3. Activate the environment, and install MiTo via pypi:

mamba activate MiTo
pip install .

4. Verify successfull installation:

import mito as mt

Releases

See CHANGELOG.md for a history of notable changes.