Utilities for MT-based single cell Lineage Tracing (scLT).
Project description
MiTo
This is MiTo: a python package for robust inference of mitochondrial clones and phylogenies.
See also nf-MiTo, the companion Nextflow pipeline.
Documentation
A preliminary documentation of key functionalitites and APIs is available at MiTo Docs.
Installation
- Install mamba (or conda)
- Clone this repo:
git clone https://github.com/andrecossa5/MiTo.git
- Reproduce MiTo conda environment:
cd MiTo
mamba env create -f ./envs/environment.yml -n MiTo
- Activate the environment, and install MiTo via pypi:
mamba activate MiTo
pip install .
- Verify successfull installation:
import mito as mt
Releases
See CHANGELOG.md for a history of notable changes.
Release history Release notifications | RSS feed
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