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pipemake

pipemake is a lightweight, flexible, and easy-to-use tool for creating and managing Snakemake pipelines. It was designed with three primary goals:

  1. Offer a collection of curated, customizable genomic analysis pipelines for researchers seeking to rapidly integrate Snakemake-based workflows into their research.

  2. Optimize computational efficiency and reproducibility by fully operating in the Snakemake ecosystem.

  3. Streamline development by creating a flexible platform with swappable pipelines that easily reuse previously written Snakemake code.

Getting pipemake

mamba

mamba create -c conda-forge -c bioconda -c kocherlab -n pipemake pipemake

Issues

  1. Check the docs.

  2. Search the issues on GitHub or open a new one.

License

Pipemake is licensed under the MIT license. See the LICENSE file for details.

Project links

Key dates

PyPI data
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  • Released:
Newer release available (1.4.9)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for aewebb80 from gravatar.com aewebb80

License

MIT

Requires

Python >=3.7

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1.4.9

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