porous_media: Python tools for porous media
porous_media provides Python utilities for porous media simulation results and meshes:
- Convert FEBio-exported VTK time series to XDMF/HDF5.
- Inspect and interpolate simulation data.
- Generate zonation patterns on annotated liver meshes.
- Render mesh data with PyVista and combine images and videos.
- Render FEBio input templates for parameter studies.
The documentation is available at matthiaskoenig.github.io/porous_media:
- Installation and quickstart
- User guides and API reference
- Contributing and development
- Release guide and release notes
Report bugs or request features through the issue tracker.
How to cite
If you use porous_media please cite the archived software on Zenodo:
König, M. (2026). porous_media: python utilities for porous media analysis and visualization (Version 0.3.0) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.19488789
@software{konig_porous_media,
author = {König, Matthias},
title = {porous_media: python utilities for porous media analysis and visualization},
year = {2026},
month = apr,
version = {0.3.0},
publisher = {Zenodo},
doi = {10.5281/zenodo.19488789},
url = {https://doi.org/10.5281/zenodo.19488789},
}
Citation metadata is available in CITATION.cff.
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Funding
Matthias König is supported by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 "QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
© 2023-2026 Matthias König, https://livermetabolism.com
1 maintainer
Metadata
1 maintainer
Release files for porous-media 0.4.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| porous_media-0.4.0.tar.gz | 1.7 MB | With provenance | Details for porous_media-0.4.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| porous_media-0.4.0-py3-none-any.whl | Python 3 | none | any | Details for porous_media-0.4.0-py3-none-any.whl |
Total release size: 2.7 MB
Release files / porous_media-0.4.0.tar.gz
| Download URL | porous_media-0.4.0.tar.gz |
|---|---|
| Size | 1.7 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
8548ba5c9c2217806d7846289e06783216327d0227b1be488bb10f9d0d5a4ab1
|
|
BLAKE2b-256 checksum How to use checksums |
003f55e862fae24f7c562f390bdcd6aa7596e7d1c464a9ad70d7189391f474be
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 19, 2026.
Transparency logRelease files / porous_media-0.4.0-py3-none-any.whl
| Download URL | porous_media-0.4.0-py3-none-any.whl |
|---|---|
| Size | 956.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
eeb81c54740fedec74d5a60742dcf737f45804fcacd2020de6d6152495d39c00
|
|
BLAKE2b-256 checksum How to use checksums |
505ccc145b5a80b92e65b95a7cd9afd1a868deaf5fe92b85eacf53d805fb09d1
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 19, 2026.
Transparency logSecurity for porous-media 0.4.0
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
Full provenance
Both files in this release have been uploaded with provenance metadata.
Attestation for porous_media-0.4.0.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 19, 2026.
Transparency logA note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
